Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00939 ATGGCGTCTTTCGACCCGAGCGTAGATTCTAGTAATTCCGACACGTTGCGAGAATCCAATCACAAGAAGCGCAGAAAAATCGGAGACCACGCCGCCGCCGATCAAAATTCGGCTGCCGCCTCCCCGTGGAGATCCGAAGAGGAGCAGCGGATCTACTCCCGCCGCCTCGTGGAGGCTCTCCGCCGCACTGCGTCATCGGCGGCCAAGCCTAGAGCCGCCGGCCAGGTCCGCGAGACCGCCGACCGCGTCCTCGCCGCCACCGCCAGAGGCCGAACACGGTGGAGCCGCGCGATTCTCAGCCGCTGGAGGAAGCTCCGCACGCAGCACAAGAAGGCGAAGAAGAAGGAGGCATCGTCCATTAACTGTTTGAAGAGAACGAGGATTGGCAACGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTCCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTTCCAAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGAACTACTCGCCGTCGCCGCGCCGGCAAGTCTCGCCGGCGGCACGTTGAGTTGA 606 0.6221 MASFDPSVDSSNSDTLRESNHKKRRKIGDHAAADQNSAAASPWRSEEEQRIYSRRLVEALRRTASSAAKPRAAGQVRETADRVLAATARGRTRWSRAILSRWRKLRTQHKKAKKKEASSINCLKRTRIGNGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALAELLAVAAPASLAGGTLS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00939 201 CDD bHLH_AtIBH1_like 132 181 IPR044549 GO:0006355
Gma20g00939 201 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 13 200 IPR044660 GO:0006355
Gma20g00939 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Gma20g00939 201 MobiDBLite consensus disorder prediction 1 48 - -
Gma20g00939 201 MobiDBLite consensus disorder prediction 15 31 - -
Gma20g00939 201 PANTHER TRANSCRIPTION FACTOR BHLH150 13 200 - -
Gma20g00939 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00939 Gma-Chr20 35969565 35970594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00939 1 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 47.442 7.16e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00939 - - gmx:100807196 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01445 10 41527717 41529423 Gma20g00939 20 35969565 35970594 ECH
Gma20g00939 20 35969565 35970594 Gma20g00939 20 35969565 35970594 ECH
Gma10g01445 10 41527717 41529423 Gma20g00939 20 35969565 35970594 GST
Gma19g02163 19 50482833 50483781 Gma20g00939 20 35969565 35970594 PCT
Gma03g02128 03 46783545 46784333 Gma20g00939 20 35969565 35970594 PCT
Gma20g00939 20 35969565 35970594 Gma19g02163 19 50482833 50483781 PCT
Gma20g00939 20 35969565 35970594 Gma03g02128 03 46783545 46784333 PCT