Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00921 ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGCTGCGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTCAATTTGGTACTTGAATATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTAAACCAAAGGATGCCGCTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCGTTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGAACTGAAAGGAGTCCCATCTGAGATTTTGATTGAAAGCGAGAATGGCAGTGAAGAAGTGTTATTGCGAGAAGCAATTCCAAGACACAGCAGCGGATCGGAAACGGCACGTTCTGGGTATTCAACAGCAGCAGGCCAAAGCTCGCTGGGATTTTGCCGTTACGGCGACTCTTGCAAATATCTCCATCCCATTCCCAACAACAATCTACAGCAGCCCCCAGTCCTAACCACACCGTCACCGTCACCGCCACCAGGGAATGTGGTAGGAGTTTCATTGGACAATCTTCCCCCCTTGCTTCAGCCTCCACCTGAAGGTGTATATCCCCACCTTCCCTTCTCGACTGGGGATAAATTTGTAATTCTACGCACCTCTCATTACTGCATCTCTGTGTCTGTGTTTAATCATTTTATTAGCCTTTTATTTCTTCCAATGTTCCTCCCTGTGTTCCCATGA 1602 0.4482 MTSVGVAPTSGLREASGHGAAAADRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTAFDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPSEILIESENGSEEVLLREAIPRHSSGSETARSGYSTAAGQSSLGFCRYGDSCKYLHPIPNNNLQQPPVLTTPSPSPPPGNVVGVSLDNLPPLLQPPPEGVYPHLPFSTGDKFVILRTSHYCISVSVFNHFISLLFLPMFLPVFP 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00921 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gma20g00921 533 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 394 - -
Gma20g00921 533 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Gma20g00921 533 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Gma20g00921 533 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 394 - -
Gma20g00921 533 Gene3D Transferase(Phosphotransferase) domain 1 154 397 - -
Gma20g00921 533 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00921 533 ProSiteProfiles Zinc finger C3H1-type profile. 422 448 IPR000571 GO:0046872
Gma20g00921 533 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00921 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 446 IPR000571 GO:0046872
Gma20g00921 533 CDD STKc_GSK3 69 361 IPR039192 -
Gma20g00921 533 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00921 533 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Gma20g00921 533 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00921 Gma-Chr20 35747808 35753288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00921 80 409 MAP Kinase Gene Family AT2G43790 34.211 1.69e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma20g00921 Pkinase 1.2e-64 CL0016
TF C3H Gma20g00921 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00921 K00924 - gmx:100798867 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01428 10 41347855 41352764 Gma20g00921 20 35747808 35753288 ECH
Gma20g00921 20 35747808 35753288 Gma20g00921 20 35747808 35753288 ECH
Gma10g01428 10 41347855 41352764 Gma20g00921 20 35747808 35753288 GST