Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00917 ATGGGTGCTGATCTTAAAGCTGAATTGTCTGGGAAAACTTTTGTTTTTGGTCTTAAGGTTTGGCAAATAATTGGAATTGCGGTTGGATTGTTTATTGTTGTCATCCTCTGTGTGCTCCCATTTTGCCTTACTTCAAGGAAGAAAACTAGAAGAGCCAGGAACAGAATTCCTGCTAGTCATATTCCTCCTGTCTCAAAGGAAATCACGGAAGTGCGGGTTGAGCAAGTGCCCGCAAATGGATTTGTTCCTCGTGAAGGAATACTTCTTACCATTCATGATAAGTCCAGTGACAAAGAATCAGACAAGGTTATGCTTCATTTAGGTGTTGGGAAGAAGAAGCATGGGGACAGTGGTAGTCATCACTCGGATTCATTTCATTACTTGGATGGAGGTGGGTCACAATCAGGGGAAGAAATTAGCTCTGGCATGGTTGGAATGTACATGTCCTCTTCTTCACACCCTATAACAGCTCCTTCACCGCTCTCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACACTGAGGGATCTTGAACTTGCTACGAACCGTTTTTCAAAAGAAAATGTAATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATCAACGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGGACTCACAGGATGCTAGTCTACGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCAATGCGACATCATGGATATCTTACCTGGGAAGCACGTATTAAAATTCTCCTTGGCACAGCTAAGGGGCTTGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCCAGCAACATATTAATTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGatatgtggctcctgaatatgcaaatactggtcttctaaatgaaaaaagtgatgtttatagctttggtgttgtgctattggaagcaattactggaagagatccagtTGACTATGGACGTCCAGCACAGGAAGTTAATATGGTTGATTGGCTGAAGACGATGGTTGGAAACAGGAGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCTACCAGAGCTTTGAAACGGGTGCTCTTAACTGCTTTGAGATGTGTAGATCCAGATTCCGAGAAAAGACCCAAGATGGGCCAAGTTGTACGTATGCTTGAGTCAGAGGAGTACCCTTTAGCAAGAGAGGATCGTAGGCACCGAAGAAATCGTGGGGTTAACTCAGAAATTGAATCACATAAGGATAATTCTGACACAGATGGCAGTGACATTCAGGGCTCTAGATCAGAAAGCGGAAGGTAA 1521 0.4109 MGADLKAELSGKTFVFGLKVWQIIGIAVGLFIVVILCVLPFCLTSRKKTRRARNRIPASHIPPVSKEITEVRVEQVPANGFVPREGILLTIHDKSSDKESDKVMLHLGVGKKKHGDSGSHHSDSFHYLDGGGSQSGEEISSGMVGMYMSSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGKSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNMVDWLKTMVGNRRSEEVVDPNIEVKPSTRALKRVLLTALRCVDPDSEKRPKMGQVVRMLESEEYPLAREDRRHRRNRGVNSEIESHKDNSDTDGSDIQGSRSESGR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00917 506 Gene3D Transferase(Phosphotransferase) domain 1 264 476 - -
Gma20g00917 506 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00917 506 PANTHER OS01G0323000 PROTEIN 3 502 - -
Gma20g00917 506 SUPERFAMILY Protein kinase-like (PK-like) 172 467 IPR011009 -
Gma20g00917 506 MobiDBLite consensus disorder prediction 462 506 - -
Gma20g00917 506 MobiDBLite consensus disorder prediction 112 132 - -
Gma20g00917 506 Pfam Protein kinase domain 189 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00917 506 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Gma20g00917 506 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00917 506 MobiDBLite consensus disorder prediction 462 494 - -
Gma20g00917 506 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Gma20g00917 506 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 502 - -
Gma20g00917 506 CDD STKc_IRAK 194 460 - -
Gma20g00917 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00917 Gma-Chr20 35708347 35713021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00917 17 462 Trihelix Transcription Factor Family AT1G70460 40.355 1.41e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma20g00917 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00917 - - gmx:100778269 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01424 10 41310815 41315191 Gma20g00917 20 35708347 35713021 ECH
Gma20g00917 20 35708347 35713021 Gma20g00917 20 35708347 35713021 ECH
Gma10g01424 10 41310815 41315191 Gma20g00917 20 35708347 35713021 GST
Gma20g00917 20 35708347 35713021 Gma03g02109 03 46633692 46638861 PCT