Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00903 ATGTCGAATAAATTGTCTTTTATTCAAGGGCTATACTCGACTTGCAAAAGCTTGCGAATACACAGGTCTCTACTTGGATATCTGCTGTACTTCGAAAAAGAATGGCATGCTGTTGCTTCATGGACTTGGGATGCCCAGGATGAAACCTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGCAAACTTCCTGGAGATGACTGCCCACTGATTTGGGGTGTATGCAATCACGCATTTCATCTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTAGGGAGTGGCAGTTTAAAGGATGA 336 0.4554 MSNKLSFIQGLYSTCKSLRIHRSLLGYLLYFEKEWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00903 111 CDD RING-H2_APC11 47 109 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Gma20g00903 111 PANTHER RING BOX 33 110 - -
Gma20g00903 111 ProSiteProfiles Zinc finger RING-type profile. 61 104 IPR001841 -
Gma20g00903 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 111 IPR013083 -
Gma20g00903 111 SUPERFAMILY RING/U-box 33 110 - -
Gma20g00903 111 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 33 110 - -
Gma20g00903 111 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 33 110 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00903 Gma-Chr20 35532372 35535550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00903 61 104 C3H Transcription Factor Family AT1G72220 41.304 3.04e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00903 K03358 - gmx:100776546 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00903 20 35532372 35535550 Gma20g00903 20 35532372 35535550 ECH