Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00902 ATGCCTTTGTATGAGTTATACCGGCTGGCCAGAGAGAAGCTTGGTAAAGAAACTACCAGCACACGTGCACCTGATCTATGTTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAACGGTCAGATTTCAAGCCAGGGTCAGTCCAGTAGAGTTAGAAGGAGCCCCTCTTGCAAGAGTTTGCCATCTCACTGCTTACCATCTCACTGTCCCAAGGTCAGGGATAAAGATGTAGGATATGGTACCAACACAAGGATGGGAAAATTTGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGTCGGTGCCATCCCGTGAAGTGGATTTCTGTCATGATGAAGATGTGTTACCTTGGTTGGATTATACATCAATGGATGGTTCCTTGCAACATGAATATGGTTCTGATTTCCTACATGCCTCAAACAGTTTTACTCTATTGGATAAAAAAAGTAATGGCAATATGGCGTTTAGGGATTCTCATAAAACTTCGGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCCAGACCTAAAGCTAGCACCAGTCAGTTATTCCCCCCATCATTGCATCAGTGTCAAACATCTTTTGTTTCTTCTAGATCAAGAGCATCGGATATAACTGAAAATAACAATACGAGTAATGCAAACCAGGATGTGTCTTATGGTGAAATTACTCATATTCTATCTTCCTCAAGTGATTTGTCTAGTGCAAAGGTGCAGAAGTGTGATCCACCTATTACTAGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTTCAGAACATTGGCCTGAAGTCTGGTTTGTCTTCAGCAAGATCAGATAGTATGGAAATTAAGAATAAAGGTGCTGCTGCAACTAGCAGCAATCCTCCTGAATCAATTCTTGTTGATTCAAGTGGTGAATGTTCGAAGGAACCGACCATGCAATGCCAGCAGGTTGTGGAGCAATCCAAGCCTGATGTGAACTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCAGAGCCTGCTAGTAAAGAGAGTGCCACAAAGATTGATCAAACTCCCAACCAAGTTCTTGGCGACAGTGGCACTAAAGGACAGACAGCTGCTGAAAAAAGTATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCACTGGTGCAGACCAAGGTTCAGACGAGCCAAATCAAAATTTGAAGCGAAAAACAAAAGACACCGACGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGCTGGTGCTAAAAAGACAGCTGGTGGGCAAGGAGGTGCAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGATGGGAATGCCTGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCGCACATGTCTGGACCTACTGCTTTACATGGGATGGCCAGATCAAATCCTCCAGGATATGGGCTTCCTGGACAAGGCTATCCCATGCATATGCCGCCAGCTTCCGTGTTTCCTTTTTCAGGAGGACCTCTCATGAATTCACCAGCTCAGGGACTACATGCCCGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCGTCTGGCTTAAAGGATCAAATGCAAAATGTTGACCCACAAGTTAAGCAAAGCACTGGTGGCTGTGACTCGACAAGTCAGATGCCTACCCAGTGTGAAGCAGCAGCTATAACATTGTGTGATTGGTTATGA 2100 0.4452 MPLYELYRLAREKLGKETTSTRAPDLCSSPENDFFELVWENGQISSQGQSSRVRRSPSCKSLPSHCLPSHCPKVRDKDVGYGTNTRMGKFGDLDSGLNEIPMSVPSREVDFCHDEDVLPWLDYTSMDGSLQHEYGSDFLHASNSFTLLDKKSNGNMAFRDSHKTSEEQGNVFKGSSAEQVETARPKASTSQLFPPSLHQCQTSFVSSRSRASDITENNNTSNANQDVSYGEITHILSSSSDLSSAKVQKCDPPITSNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLSSARSDSMEIKNKGAAATSSNPPESILVDSSGECSKEPTMQCQQVVEQSKPDVNSLQPKSVEQNAVPSKQSEPASKESATKIDQTPNQVLGDSGTKGQTAAEKSMEPAVASSSVCSGTGADQGSDEPNQNLKRKTKDTDDSECHSEDVEEESAGAKKTAGGQGGAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVAHMSGPTALHGMARSNPPGYGLPGQGYPMHMPPASVFPFSGGPLMNSPAQGLHARGSSGLVETVDSASASGLKDQMQNVDPQVKQSTGGCDSTSQMPTQCEAAAITLCDWL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00902 699 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Gma20g00902 699 Gene3D - 455 518 IPR036638 GO:0046983
Gma20g00902 699 MobiDBLite consensus disorder prediction 416 443 - -
Gma20g00902 699 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 IPR044273 GO:0003700|GO:0006355
Gma20g00902 699 MobiDBLite consensus disorder prediction 289 415 - -
Gma20g00902 699 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Gma20g00902 699 MobiDBLite consensus disorder prediction 168 192 - -
Gma20g00902 699 MobiDBLite consensus disorder prediction 157 192 - -
Gma20g00902 699 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 520 IPR036638 GO:0046983
Gma20g00902 699 SMART finulus 466 515 IPR011598 GO:0046983
Gma20g00902 699 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 - -
Gma20g00902 699 CDD bHLH_AtPIF_like 460 522 - -
Gma20g00902 699 MobiDBLite consensus disorder prediction 289 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00902 Gma-Chr20 35507828 35511726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00902 1 589 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.564 4.43e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g00902 HLH 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00902 K12126 - gmx:100794974 1328.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00902 20 35507828 35511726 Gma20g00902 20 35507828 35511726 ECH
Gma10g01410 10 41098259 41102323 Gma20g00902 20 35507828 35511726 GST