Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00898 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTGCTGAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGCAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAGGAAGAAAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGAAAAGGACATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCGTCTGTGGGATCCAATGAAGTGAGTCTGGTTGATCATCACCAGCAACAACCAAAAATCATGCCTAATTCATCATCAGAGAGATACCCTCTTGAAGTTTCCACAACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGTACCCCCACCACCTGCCACCACCACCACAACAACAACAACACTTCTGATGTTGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAACATGTCCCTCTCTGCAAACCCCAACGCCTCTCTTTGTTTTGTTCCAGCCTCCACTTCTTCAGACCTTAATAACAATTCCACCATAACCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACACGTGAAGCTCCAATCTAATAACAACAACCCTTCCATTTCATCTGATGGGGTTCAAAACTGGGAAACAAGTAACTTAAATAACAGCAACAGCACAAACAAAAACAATGGGAGTATGCAGTTACAAAGCTGCACAAACTTCATTGACAACACGTGGGGGGTGGGAGAGTCTATGAAGGTTGTTAACATCAACAAAGATGCTGATCAAATGCCTCTACAAGCAGAACAAGAAGATCTGAAATGGTCTGAGTATCTTAATACCCCGTTTATTCTGGGAAACAACACAGCGCAGAATCATCAAATTCATACCTCTCAATCTATCTATAGTGAGGTTAAACCAGAAACAGGTTTCATAACAGACGAGTCATGTGCTACATGGCACCATTATCAGAATCAGACACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA 1287 0.4382 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENEKDMMPPSTDKSTQKASVGSNEVSLVDHHQQQPKIMPNSSSERYPLEVSTTSSTQELFLDRFGTPTTCHHHHNNNNTSDVVGSYFSFQHLNYGTTTNMSLSANPNASLCFVPASTSSDLNNNSTITSSMLPSIFPTQHVKLQSNNNNPSISSDGVQNWETSNLNNSNSTNKNNGSMQLQSCTNFIDNTWGVGESMKVVNINKDADQMPLQAEQEDLKWSEYLNTPFILGNNTAQNHQIHTSQSIYSEVKPETGFITDESCATWHHYQNQTPAFQLSDIYSKDLQRFSVTFGQTL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00898 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma20g00898 428 PANTHER MYB DOMAIN PROTEIN 55 1 421 - -
Gma20g00898 428 CDD SANT 17 61 IPR001005 -
Gma20g00898 428 Gene3D - 11 67 - -
Gma20g00898 428 MobiDBLite consensus disorder prediction 120 154 - -
Gma20g00898 428 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma20g00898 428 SMART sant 13 63 IPR001005 -
Gma20g00898 428 SMART sant 66 114 IPR001005 -
Gma20g00898 428 MobiDBLite consensus disorder prediction 120 142 - -
Gma20g00898 428 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma20g00898 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma20g00898 428 MobiDBLite consensus disorder prediction 159 178 - -
Gma20g00898 428 CDD SANT 69 109 IPR001005 -
Gma20g00898 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma20g00898 428 PANTHER HOMEODOMAIN-RELATED 1 421 - -
Gma20g00898 428 Gene3D - 68 141 - -
Gma20g00898 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma20g00898 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00898 Gma-Chr20 35405082 35406665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00898 1 428 MYB Transcription Factor Family AT1G09540 47.816 2.79e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00898 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00898 K09422 - gmx:778072 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01407 10 41035250 41037351 Gma20g00898 20 35405082 35406665 ECH
Gma03g02097 03 46514817 46516799 Gma20g00898 20 35405082 35406665 ECH
Gma19g02133 19 50227174 50229231 Gma20g00898 20 35405082 35406665 ECH
Gma20g00898 20 35405082 35406665 Gma20g00898 20 35405082 35406665 ECH
Gma10g01407 10 41035250 41037351 Gma20g00898 20 35405082 35406665 GST
Gma19g02133 19 50227174 50229231 Gma20g00898 20 35405082 35406665 PCT
Gma03g02097 03 46514817 46516799 Gma20g00898 20 35405082 35406665 PCT
Gma20g00898 20 35405082 35406665 Gma19g02133 19 50227174 50229231 PCT
Gma20g00898 20 35405082 35406665 Gma03g02097 03 46514817 46516799 PCT