Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00897 ATGGCGAGGATTCCTAACAAGATTAGGTCTATTGATGGATCAAAAGAGACACTTAAGCTTGCTGTTAGAATCACCGATCTTTGGTTCGTTGGGACTCCCAACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTCAAGAATAATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTCGTTGCTGGCAATTTTGTGTCTAGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAAGTGGTCTTTCGGCATGTTTCATCAAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTATTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCGCATGGTAATTATCCAGCTTCAGTGATCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGACTCCAGTTTTACTACCTGGCGATCAAGCAAGTTCACAAATTTCAGGGGGAAGCCAGCTATCATCAAAGGATTTGTTTCTTTCAAAAGCTGAAGTCAAAACTATTTTTGAGATCAATGGCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCTTGTGTTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGCGGATGTGGCAAGGATAATGATCAGCCTGTTCTGAGGTATAGAGTTGAAGTCATGGTTACCCAAAACAATGAGAGTAGCAAGTTTTTGCTCTGGTACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTCGACAAATTGTTGGGTCATGTGTTTGCTTTTAAGGTCAGGATTCAATCAAAATTCAAAAATGCAGTTGTTCTTAGATACTCAAATGACCTAGATTTGATCAATGTTGTTCTCGAGATGCTGCCTGATAATGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATAATACTACGCATGTTGAATGTGTAAGTTAA 1386 0.3838 MARIPNKIRSIDGSKETLKLAVRITDLWFVGTPNKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNNGQFRVCEHEYKLFFIGVTVVREADLHELPFKEFRFVEFANVVAGNFVSSLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCTLWENYCIQFLSYLNERGDDGPMVIILTHARIKDAHGNYPASVINSFKASKLLINDPILEIQEFKERLLDLGVEVTPVLLPGDQASSQISGGSQLSSKDLFLSKAEVKTIFEINGISEDVVCVTVGTISKIVMDNHSWCYPACVQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEVMVTQNNESSKFLLWYRECAELIGETADDVNRVKIEDGDLDLNASPQALDKLLGHVFAFKVRIQSKFKNAVVLRYSNDLDLINVVLEMLPDNEACSKIDPSNVDCNNTTHVECVS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00897 461 CDD RPA1_DBD_B_like 137 239 - -
Gma20g00897 461 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 362 - -
Gma20g00897 461 SUPERFAMILY Nucleic acid-binding proteins 14 106 IPR012340 -
Gma20g00897 461 Pfam Domain of unknown function DUF223 40 128 IPR003871 -
Gma20g00897 461 Pfam Replication factor-A C terminal domain 297 412 IPR013955 -
Gma20g00897 461 Gene3D - 5 106 IPR012340 -
Gma20g00897 461 CDD RPA1_DBD_A_like 19 104 - -
Gma20g00897 461 PANTHER REPLICATION FACTOR A 1, RFA1 11 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma20g00897 461 CDD RPA1_DBD_C 275 409 IPR013955 -
Gma20g00897 461 SUPERFAMILY Nucleic acid-binding proteins 117 239 IPR012340 -
Gma20g00897 461 Gene3D - 257 428 IPR012340 -
Gma20g00897 461 SUPERFAMILY Nucleic acid-binding proteins 277 413 IPR012340 -
Gma20g00897 461 Gene3D - 111 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00897 Gma-Chr20 35396713 35398995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00897 1 437 Core DNA Replication Machinery Family AT5G08020 22.857 4.53e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00897 - - gmx:102669742 843.188