Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00896 ATGAGAACGGGGAACCTCTTCTGGCTTGGCATTGTTGCAGCACTTGTTTTCAGCTTCTGGGTTGATGCCTTTTCAGCCAATCAATATTACCCCCACCACCACTTCAATGAAACCGAGTTCTCTTCGTTGGAGTCTCAAGAACAGGCACATTCATCCCTCCTTGGGAGGACTCCTCTCATGGTTGGACTCACCCTTATTCAAAGTGCTGCTGCCAAAGGAGCAGTTTGCTTGGATGGAACATTGCCTGGTTATCATTTGCATCGGGGATATGGATCAGGAGCAAACAGCTGGGTCGTTAATTTAGAGGGAGGTGGGTGGTGTAATGACGTTAGATCATGTGTTTATCGCAAGAAAACACGGCGTGGGTCATCAACATTCATGGAAAAACAGATACCTTTTACAGGAATATTAAGCAACAGTGCTGAAGATAATCCAGATTTTTTCAACTGGAACAGAGTGAAAATTCGTTATTGTGATGGTGCCTCTTTTGCTGGGGATGGTGAAGATAAGGTGGCGCAACTGCAATTTAGAGGACAGCGTATTTGGTTGGCTGCAATGGAAGATTTGAAGTCAAAGGGAATGCGATTTGCCAAGCAGGCTCTTCTTTCTGGATGCTCGGCTGGTGGTCTGGCTACTATTATACACTGTGATGAATTCAGAGGTTTTTTCCCAGAGACTACCAAAGTGAAGTGTCTTAGTGATGCAGGATTATTTCTTGATGCGATTGATGTCTCCAGGGGACATACCATCAAGAATTTATTCAGTGGTGTTGTAAGGCTACAGGGAGTGCAAAAGAATCTGCCGCACTTTTGTACTAATCACCTTGATCCCACTTCGtgcttcttccctcagaatttgattgccggtattagaaccccactattcattcttaatacagcctatgactcatggcagGTCCAAACAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATGATTGTagattaaatcatgctaaatgtacttcttcacaaatccaatatttgcaaggtggattcaggaatcaaatgctgaatgctattaaaggcttctcaagatcacctcaaaatggattgttcataaattcatgttttgctcactgccaatctgagaggcaggatacatggtttgctgacaattctcctgtcattgggaacaagGCAATTGCTCTTGCTGTTGGAGACTGGTATTTCGACCGAGCAGTTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACATGTCACCATCTTGTCTTCAGATGA 1278 0.3521 MRTGNLFWLGIVAALVFSFWVDAFSANQYYPHHHFNETEFSSLESQEQAHSSLLGRTPLMVGLTLIQSAAAKGAVCLDGTLPGYHLHRGYGSGANSWVVNLEGGGWCNDVRSCVYRKKTRRGSSTFMEKQIPFTGILSNSAEDNPDFFNWNRVKIRYCDGASFAGDGEDKVAQLQFRGQRIWLAAMEDLKSKGMRFAKQALLSGCSAGGLATIIHCDEFRGFFPETTKVKCLSDAGLFLDAIDVSRGHTIKNLFSGVVRLQGVQKNLPHFCTNHLDPTSCFFPQNLIAGIRTPLFILNTAYDSWQVQTSLAPSSADPHGFWHDCRLNHAKCTSSQIQYLQGGFRNQMLNAIKGFSRSPQNGLFINSCFAHCQSERQDTWFADNSPVIGNKAIALAVGDWYFDRAVVKAIDCPYPCDNTCHHLVFR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00896 425 Pfam Pectinacetylesterase 58 404 IPR004963 GO:0016787
Gma20g00896 425 PANTHER PECTIN ACETYLESTERASE 5 424 - -
Gma20g00896 425 PANTHER NOTUM-RELATED 5 424 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00896 Gma-Chr20 35338894 35343254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00896 60 425 Carbohydrate Esterase AT1G57590 73.497 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00896 K19882 - gmx:100793403 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01405 10 40932160 40937393 Gma20g00896 20 35338894 35343254 ECH
Gma03g02096 03 46496461 46500874 Gma20g00896 20 35338894 35343254 ECH
Gma19g02132 19 50212774 50217344 Gma20g00896 20 35338894 35343254 ECH
Gma17g00400 17 3245963 3250803 Gma20g00896 20 35338894 35343254 ECH
Gma20g00896 20 35338894 35343254 Gma20g00896 20 35338894 35343254 ECH
Gma10g01405 10 40932160 40937393 Gma20g00896 20 35338894 35343254 GST
Gma19g02132 19 50212774 50217344 Gma20g00896 20 35338894 35343254 PCT
Gma03g02096 03 46496461 46500874 Gma20g00896 20 35338894 35343254 PCT
Gma20g00896 20 35338894 35343254 Gma19g02132 19 50212774 50217344 PCT
Gma20g00896 20 35338894 35343254 Gma03g02096 03 46496461 46500874 PCT