Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00894 ATGTTGATTACTGAGGAGTGCGCGGGAAGCCTTTGGTTCTCTCTCATTTCTCGTTCTTCTTCTGCCGTCATACTCACACCACTCTTCTTCCATTTTCATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAAGCGGAACTGAAATGCTCACTAATGAGGCTGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATAAAACCAGTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCCAAACGTTACTCCAAGAGAGCTGAGGCTACTGAAGATTTGTCAGAAGCCTTAGAGACTGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGTACAGTGAAGGTGACAAAACAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCCCTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGATCTCCTAAATTTCTTCGCCACCTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTCGAAGTTGCAAAGATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTGAAAATATACTGGAGAACCTAAACAAAGAGAGGTACCAGATACCAGATAATTGGCCATATCAGGAGGCTCGGCGGCTTTTTAAAGAACCAATGGTCATAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAGGCAATAGAAAAAATTAAAGTGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACAGTAAATCCATCTGTACCTATCAAACGCAAGGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAG 1284 0.4174 MLITEECAGSLWFSLISRSSSAVILTPLFFHFHFLCEFLFPYTNQMGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPMVITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFFKPTVNPSVPIKRKETPVNNAKETNKKTKAGGGKKKK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00894 427 Hamap Flap endonuclease 1 [fen]. 46 392 IPR023426 GO:0016788
Gma20g00894 427 ProSitePatterns XPG protein signature 2. 195 209 IPR019974 GO:0016788
Gma20g00894 427 SMART 53exo3 74 351 IPR002421 GO:0003677
Gma20g00894 427 CDD PIN_FEN1 49 376 - -
Gma20g00894 427 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 264 396 IPR036279 -
Gma20g00894 427 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 46 417 IPR006084 -
Gma20g00894 427 Gene3D - 268 331 - -
Gma20g00894 427 Pfam XPG N-terminal domain 46 153 IPR006085 GO:0004518
Gma20g00894 427 Gene3D - 55 267 - -
Gma20g00894 427 SMART HhH_4 266 299 IPR008918 GO:0003677|GO:0003824
Gma20g00894 427 Pfam XPG I-region 195 279 IPR006086 GO:0004518
Gma20g00894 427 ProSitePatterns XPG protein signature 1. 125 139 IPR019974 GO:0016788
Gma20g00894 427 SMART xpgn3 46 153 IPR006085 GO:0004518
Gma20g00894 427 MobiDBLite consensus disorder prediction 386 427 - -
Gma20g00894 427 SUPERFAMILY PIN domain-like 47 279 IPR029060 -
Gma20g00894 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 87 IPR006084 -
Gma20g00894 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 146 IPR006084 -
Gma20g00894 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 191 208 IPR006084 -
Gma20g00894 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 212 232 IPR006084 -
Gma20g00894 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 269 284 IPR006084 -
Gma20g00894 427 Coils Coil 144 164 - -
Gma20g00894 427 CDD H3TH_FEN1-Euk 267 335 - -
Gma20g00894 427 SMART xpgineu 192 264 IPR006086 GO:0004518
Gma20g00894 427 PANTHER FLAP ENDONUCLEASE 1 46 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00894 Gma-Chr20 35305680 35311326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00894 46 406 Core DNA Replication Machinery Family AT5G26680 88.089 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00894 K04799 - gmx:100792878 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00894 20 35305680 35311326 Gma20g00894 20 35305680 35311326 ECH
Gma10g01403 10 40878040 40882903 Gma20g00894 20 35305680 35311326 GST