Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00891 ATGGCGGTCCCTGGTCACACTCACAGTTGTGGTGAGTTTGAAGAAGAGGGGGTTGGGTTCCTTGGAGAGACATGGGTGTTGTTGTTGCTCACACCTCTTTTCTTTATTTTAACCCTTAGCTTCATTGCTTCCTTCCTTTTGTTGCCACTCTTTCCCTTTCAAGTGCAGTTTGGGGCGAAAATGTCTACCTCAAGGCCTAGCCAATCATCCAGCAATTCGGGGAGATCAAGACGTAGTGCTAGGGCTATGGCTCTGGCAACTGTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCGGTGCGCATCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGCATGACAAAGTTACAACAGCTTACCTCCACCACATGCAGAAAGGCAAGATGATTCAGCCTTTTGGGTGCTTGTTGGCCTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAACGCACCCGAAATGCTGACCATGGTGAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGTATTGGCACTGACATAAAAACTCTATTCACTGCACCAAGTGCTTCTGCATTGCAGAAGGCTCTAGGATTTGCAGAGGTTTTGCTTCTTAACCCTGTCCTTATCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATCCATCGTGTCACTGGTAGTATGATCATTGACTTTGAGCCAGTCAAGCCGTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCGTTGCCTAGTGGGAGCATGGAAAGACTATGTGATACTATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCACGAGGATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCAGGTCTTGAGCCATATCTGGGTTTGCACTATCCAGCCACCGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTTCGTATGATAGTTGATTGTCATGCAAAACACGTGAGGGTTCTTCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTAAGAGCTCCTCATAGCTGCCACGCACAGTACATGGCGAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAATGAAGAAGATGGGGACACTGATGCTATTCAGCCACAAAAGAGGAAGAGACTTTGGGGATTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTATTTGCCATCCATGTTAACAAAGAAATAGAGTTGGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATCTGGTGATGCGAGATGCACCCCTGGGAATTGTGTCAGAGAGCCCCAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCCTCATATATAAGAACAAGGTATGGAGATTAGGAGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTTTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTCAGTACAGATAGCTTGTCTGATGCAGGGTTCCCATCGGCTCTTTCTCTGGGTGATGTTGTTTGTGGAATGGCAGCAGTTAGAGTAACTGCAAAAGACGTAGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAAGCTGGAGAAAAAGATGATGGTAGGAGGATGCATCCAAGATCATCATTCAAGGTTTTCCTTGATGTTGTGAAGGCAAGGAGCTTACCATGGAAGGAATATGAAATAGATGCTATGCATTCCTTGCAGTTAATACTGAGAAATGCATTCAAAGATACCGAGAGTATGGATTTAAACACAAAAGCAATTAATACAAGACTAAGCGATTTGAAGATTGAGGGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATTGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAACATAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATGGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTAACTTAGCACTGCTAGGTGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATGGATTCTGGTCCTATTAGTTTAGTAGTAAATGCTTGCGCAAGCAGGGATCTTCGAGATAATGTTGTTGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAGAAGAATGTCATGGACAAATTTACGCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCGCAATCCATTAATCCCTCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGACGAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGCTTTTTGGCACCCATATGGCTGCTTGTCGCCTAAAGAATCAAGAAGCTTTTGTTAATTTGGGTGTTGTACTTAATAAAGCCATGACTGGTTTGGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTGGAATGCCTGCTTTCTGTGAGTAAGAAATTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCAGAGCTCCAACAAGCATTACATATTCAGCGCCTATCCGAGCAAACTGCCTTGAAGAGATTAAATGCATTAAGTTACATGAAAAGGCAAATCAGGAATCCTTTGTGTGGAATTATATTTTCCCGGAAAATGTTGGAGGGTACTGCCTTGGGAACAGAGCAGAAACAACTTCTACGCACTAGTGCTCAGTGCCAGCAGCAGCTTAGTAAAATTCTTGATGACTCAGATCTTGATAGTATCATAGATGGTTACTTGGATCTTGAAATGGCTGAGTTCACTCTGCATGAAGTTCTGGTTACCTCACTTAGTCAGGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAGCAGATTGTGATGGAAACTTTATATGGTGATAGTCTTAGGCTTCAGCAGGTATTGGCTGACTTTTTACTTATTTCCATCAATTTCACTCCAAATGGAGGTCAGGTTGTTGTAGCAGGCACTCTAACCAAAGAACAGTTAGGCAAATCCGTCCATCTCGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTACCAGAAGCATTACTGAACCAGATGTTTGGAAACAACGGGCTAGAATCCGAGGAGGGTATTAGCCTACTGATCAGCAGAAAGCTGCTGAAGCTGATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCAGCAGCCCATAATTTGAAAGGTTAA 3552 0.4378 MAVPGHTHSCGEFEEEGVGFLGETWVLLLLTPLFFILTLSFIASFLLLPLFPFQVQFGAKMSTSRPSQSSSNSGRSRRSARAMALATVDAKLHATFEESGSSFDYSSSVRISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFAEVLLLNPVLIHCKTSGKPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVKCDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDVVCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKARSLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVRLIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLTLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELFGTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEGTALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKG 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00891 1183 SUPERFAMILY PYP-like sensor domain (PAS domain) 682 789 IPR035965 -
Gma20g00891 1183 Gene3D - 259 621 IPR029016 -
Gma20g00891 1183 ProSiteProfiles Histidine kinase domain profile. 960 1179 IPR005467 -
Gma20g00891 1183 Gene3D PAS domain 670 807 - -
Gma20g00891 1183 Pfam PAS fold 809 931 IPR013767 GO:0006355
Gma20g00891 1183 Pfam PAS fold 679 793 IPR013767 GO:0006355
Gma20g00891 1183 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 278 450 IPR016132 -
Gma20g00891 1183 ProSiteProfiles PAS repeat profile. 676 746 IPR000014 -
Gma20g00891 1183 CDD PAS 687 793 IPR000014 -
Gma20g00891 1183 Pfam PAS fold 129 245 IPR013654 GO:0006355
Gma20g00891 1183 SMART pas_2 678 744 IPR000014 -
Gma20g00891 1183 SMART pas_2 808 877 IPR000014 -
Gma20g00891 1183 PRINTS Phytochrome signature 193 215 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 293 312 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 378 399 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 490 510 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 575 594 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 608 626 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 679 695 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 698 713 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 771 788 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 PRINTS Phytochrome signature 791 811 IPR001294 GO:0006355|GO:0009584
Gma20g00891 1183 SMART HisKA_10 953 1018 IPR003661 GO:0000155|GO:0007165
Gma20g00891 1183 SMART HKATPase_4 1065 1177 IPR003594 -
Gma20g00891 1183 Pfam GAF domain 278 460 IPR003018 GO:0005515
Gma20g00891 1183 CDD PAS 820 931 IPR000014 -
Gma20g00891 1183 Pfam Phytochrome region 473 648 IPR013515 GO:0006355|GO:0009584
Gma20g00891 1183 Gene3D PAS domain 138 381 - -
Gma20g00891 1183 ProSiteProfiles PAC domain profile. 749 805 IPR000700 -
Gma20g00891 1183 PIRSF Phytochrome_conventional 59 1183 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gma20g00891 1183 Gene3D PAS domain 822 934 - -
Gma20g00891 1183 SUPERFAMILY GAF domain-like 258 457 - -
Gma20g00891 1183 ProSitePatterns Phytochrome chromophore attachment site signature. 378 387 IPR013516 -
Gma20g00891 1183 Gene3D - 465 638 IPR043150 -
Gma20g00891 1183 ProSiteProfiles PAS repeat profile. 809 861 IPR000014 -
Gma20g00891 1183 SUPERFAMILY GAF domain-like 468 646 - -
Gma20g00891 1183 Gene3D - 993 1170 IPR036890 -
Gma20g00891 1183 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 246 IPR035965 -
Gma20g00891 1183 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1015 1167 IPR036890 -
Gma20g00891 1183 SMART gaf_1 278 470 IPR003018 GO:0005515
Gma20g00891 1183 PANTHER TWO-COMPONENT HISTIDINE KINASE 61 1178 - -
Gma20g00891 1183 SUPERFAMILY PYP-like sensor domain (PAS domain) 823 929 IPR035965 -
Gma20g00891 1183 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1065 1173 IPR003594 -
Gma20g00891 1183 PANTHER PHYTOCHROME A 61 1178 - -
Gma20g00891 1183 TIGRFAM sensory_box: PAS domain S-box protein 683 799 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00891 Gma-Chr20 35284548 35290193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00891 61 1179 Histidine Kinase Gene Family AT1G09570 78.807 0.0 1868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00891 K12120 - gmx:100790763 2160.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00891 20 35284548 35290193 Gma20g00891 20 35284548 35290193 ECH
Gma10g01400 10 40856643 40861306 Gma20g00891 20 35284548 35290193 GST
Gma19g02129 19 50181682 50188016 Gma20g00891 20 35284548 35290193 PCT
Gma03g02093 03 46469949 46472130 Gma20g00891 20 35284548 35290193 PCT
Gma20g00891 20 35284548 35290193 Gma19g02129 19 50181682 50188016 PCT
Gma20g00891 20 35284548 35290193 Gma03g02093 03 46469949 46472130 PCT