Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00887 ATGGCTTCCACCGTAGGTATCTCTTCTTCCATCTCCATATGCAAAAACCCCTCTTTTCAACTCCTCAGAAGACCAACCGCCACAACCACCTCTGTTTTCTTCAACACCCTTCCCCGTAACCGTAACGCCACACTCTCTTCCCTTCCTTCCGCCATTGCCACCCCCACCTCATCCATTCTCACAGAACAACCCTTCAAGGGTTTAACTTTAGACGACGCTAGTAATAGCAACCAATTTGGCTATGACTACGAACCTGACACCAATGTGAGCGACCACGAACTCGACATTTCCAAGTTGGGTTTACCTTCGCCCCTCGTTCACTCCCTACAACAACGTGGGATCACCAGTCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCACTAGAAGGTAAAGATATCATTGCTCGTGCAAAGACCGGAACTGGCAAGACATTAGCATTCGGAATTCCAATTCTTAAGGGCCTCACTGATGATGATGAACAAAGTTCTCACAGGAGGTCTGGGAGGCTTCCTAAAGCATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTCGAGAAAGAGATACAAGAATCTGCACCTTATCTCAAAACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACCCAGCAGGGTGCGCTTTCCCACGGTGTTGATGTGGTGGTTGGAACGCCGGGTAGGATAATTGACCTGGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTGCTTGATGAAGCTGATCGGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTAGATAAGGTCCCAGCTCAGCGCCAGACCATGCTTTTTTCTGCGACCATGCCTGGTTGGGTGAAGAAACTGTCAAGAAAGTATTTGAATAACCCTTTGACGATTGATTTGGTTGGTGAACAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCGACTGCCTCTTCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCAATGGCATTAACAAGTAGTATAGCTTCCGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGAGGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTGTTAGTCCACCAGCTATGGAAGAGATCTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTTAATAGAGTTCATCCTGAGTCTGTTGATTTTTTCATTGCAACTGCACAAAAACTGGTTGAAGAACAAGGTGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCTTCATGCCGGTCTCTTATCAATCATGAACAGGGATGGACTACATTGCAACTGACTCGAGATCCAGATACTTCTGCAAGATATTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAAATAGCTAAAGAGTTACTCACTAAGGATCTGCCATCTGGAAACACTATTTCCAAAATCACTAAGTTACCTCCTTTGCAAGATGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGAAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTTGGACAAGGTGGTAGAAGTTTCAGATCTGGCAACAAGTTTCGAATGGGTAAAAGCAGCGGGGATGACTGGCTAATTGGAGGCAGTAGTAGATCAAGCAGGTTTTCATCATCCAACAGaagcggcgggcatggaggggcctgctttaattgtggaaaacctggccatcgggcatcagattgtaccaccaaaaaacgaGTCTTTTTCTAG 2211 0.431 MASTVGISSSISICKNPSFQLLRRPTATTTSVFFNTLPRNRNATLSSLPSAIATPTSSILTEQPFKGLTLDDASNSNQFGYDYEPDTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDDDEQSSHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPESVDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSARYFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKDLPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSRDQRGFRSSRGWEGGQDSDDEFGQGGRSFRSGNKFRMGKSSGDDWLIGGSSRSSRFSSSNRSGGHGGACFNCGKPGHRASDCTTKKRVFF 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00887 736 MobiDBLite consensus disorder prediction 692 711 - -
Gma20g00887 736 SMART ultradead3 113 319 IPR014001 -
Gma20g00887 736 SUPERFAMILY Retrovirus zinc finger-like domains 696 733 IPR036875 GO:0003676|GO:0008270
Gma20g00887 736 Pfam DEAD/DEAH box helicase 118 291 IPR011545 GO:0003676|GO:0005524
Gma20g00887 736 SMART helicmild6 356 436 IPR001650 -
Gma20g00887 736 Gene3D - 706 734 - -
Gma20g00887 736 MobiDBLite consensus disorder prediction 613 716 - -
Gma20g00887 736 Pfam Helicase conserved C-terminal domain 330 436 IPR001650 -
Gma20g00887 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 476 IPR001650 -
Gma20g00887 736 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Gma20g00887 736 CDD DEADc 105 303 - -
Gma20g00887 736 CDD GUCT_Hera 531 610 - -
Gma20g00887 736 PANTHER - 8 726 - -
Gma20g00887 736 SMART c2hcfinal6 714 730 IPR001878 GO:0003676|GO:0008270
Gma20g00887 736 CDD SF2_C_DEAD 316 445 - -
Gma20g00887 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 457 IPR027417 -
Gma20g00887 736 Pfam Zinc knuckle 714 729 IPR001878 GO:0003676|GO:0008270
Gma20g00887 736 Gene3D - 95 306 IPR027417 -
Gma20g00887 736 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 726 - -
Gma20g00887 736 Pfam GUCT (NUC152) domain 523 623 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gma20g00887 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 302 IPR014001 -
Gma20g00887 736 MobiDBLite consensus disorder prediction 630 663 - -
Gma20g00887 736 Gene3D - 319 524 IPR027417 -
Gma20g00887 736 ProSiteProfiles Zinc finger CCHC-type profile. 715 728 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00887 Gma-Chr20 35200650 35206046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00887 96 458 Eukaryotic Initiation Factors Gene Family AT1G72730 36.512 5.94e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00887 - - gmx:100815040 1405.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01396 10 40789312 40795635 Gma20g00887 20 35200650 35206046 ECH
Gma20g00887 20 35200650 35206046 Gma20g00887 20 35200650 35206046 ECH
Gma10g01396 10 40789312 40795635 Gma20g00887 20 35200650 35206046 GST
Gma19g02125 19 50142014 50147585 Gma20g00887 20 35200650 35206046 PCT
Gma03g02087 03 46423655 46431481 Gma20g00887 20 35200650 35206046 PCT
Gma20g00887 20 35200650 35206046 Gma19g02125 19 50142014 50147585 PCT
Gma20g00887 20 35200650 35206046 Gma03g02087 03 46423655 46431481 PCT