Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00882 ATGGAAAAACTAATTTTCAGTGGTCTAATAATGCTTGTGGTGTTATTCACCACAGAACTTAGAGTAGCATCCGCAATTTGGCTGCGAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCACAGGAACAATGGGTGGGGCATGTGGGTATGGAAATCTGTACACTGATGGTTATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGCAAGTCATGCGGTGGTTGCTATCAGATAGTTTGTGACGCAAGCCAAGTGCCCCAATGGTGCCTCAGGGGCACTTCCATCACAATCACTGCCACAAATTTCTGCCCTCCAAACTATGCACTCCCTAGTGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGACCATTGCCAAATACAAGGCTGGCATTGTTCCGATTCTTTACAGAAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTACCATCAATGGGAGAGACTATTTTGAACTAGTGCTTATAAGCAACGTGGGAGGAGCAGGGGATGTTTCAAGAGTTTGGATCAAAGGGTCCAAAATGAGTAACTGGGAACCCATGTCAAGAAATTGGGGAGCTAACTGGCAAAGCTTAAGCTATCTCAATGGTCAGAGCTTGTCCTTCAGAGTACAACTCAGCAATGGAAGGATTCGCACAGCTTATAATGTGGCACCCTCTACTTGGAGATTTGGCCAGTCTTTCATCAGCAAGGTTCAGTTCTGA 765 0.4497 MEKLIFSGLIMLVVLFTTELRVASAIWLRAHATFYGGSDATGTMGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLRGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFETIAKYKAGIVPILYRKVGCKRTGGIRFTINGRDYFELVLISNVGGAGDVSRVWIKGSKMSNWEPMSRNWGANWQSLSYLNGQSLSFRVQLSNGRIRTAYNVAPSTWRFGQSFISKVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00882 254 PANTHER EXPANSIN-A15 6 254 IPR002963 GO:0009664
Gma20g00882 254 SUPERFAMILY Barwin-like endoglucanases 18 178 IPR036908 -
Gma20g00882 254 SMART dpbb_1 62 150 IPR007112 -
Gma20g00882 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Gma20g00882 254 Pfam Lytic transglycolase 62 150 IPR009009 -
Gma20g00882 254 Gene3D - 16 156 IPR036908 -
Gma20g00882 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Gma20g00882 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Gma20g00882 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Gma20g00882 254 Gene3D - 160 254 IPR036749 -
Gma20g00882 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Gma20g00882 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Gma20g00882 254 PANTHER EXPANSIN 6 254 - -
Gma20g00882 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00882 Gma-Chr20 35134841 35136420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00882 5 254 Expansin Gene Family AT4G01630 76.190 6.86e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00882 - - gmx:100813434 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01389 10 40714049 40715237 Gma20g00882 20 35134841 35136420 GST
Gma19g02118 19 50066865 50068282 Gma20g00882 20 35134841 35136420 PCT
Gma03g02081 03 46357645 46359623 Gma20g00882 20 35134841 35136420 PCT
Gma20g00882 20 35134841 35136420 Gma19g02118 19 50066865 50068282 PCT
Gma20g00882 20 35134841 35136420 Gma03g02081 03 46357645 46359623 PCT