Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00880 ATGCAATATATTCCAATATCTAAGAGAACCCTTTTTTTGTCTGTAGAATCTACTATGGATTTTGTGAGCCAAAGGCACCTACTGCATTCTATGCAACAAGCTCATTCCCCGTGCACAACTCCCCTTAGTGATGTGACTAATCCTTCTCCATATAATTATTCCTTCTTAGTAATCCTTGTGATTGGAATGATGTTTACAGCTTTCTTCCTTATAGGCTACTACATATTAGTTGTCAAGTGCTGCCTCAATTGGCCCCATGTTGATCATGTAAGAATTTTTTCTCTATCTAGGTCTCATGAAGACCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATTCCAGTGATTCAATTTAAGCCAGAAGAAGGTGAAAGAAGCTTTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAGCAAGACGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTTATTGCCCTCTTTGTAGAAGAACTGTTTCCTTGACAAGCCAAGTCCACCATCATGTAGACCAAGTCAACCTTCTTCTCACTCCAAGGCTTTCCCCTCAAGGTCAAAGCCAAAACAATGAAAACCTCATTGGTGCTGCTGAGGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAAACTTGCAAGAAAGACAAGAGTTACCAACATGTCGTATTATTAGTCTTTCTTCACAAATGAAGCTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACAAGTTTGGGAGATGAGTGTATAGGTGTTAGATCCAAAGATGAAAGGTTATCAGTTCAAGCCATGAGAAGGTCCTTTTCCATGGACTCATCGGTGGATAGAAAGTTTTATGAGGCAGTTCAAGAGGCTTTACAACAACCACAACAACAAAATGGGAATGTTCTTGAGGTCAGCACAATTGAAGCTTGTGATGGTAGTGGTAGAGTTAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCTGAGACCCCTGATTTTTTTATTTAA 1113 0.4007 MQYIPISKRTLFLSVESTMDFVSQRHLLHSMQQAHSPCTTPLSDVTNPSPYNYSFLVILVIGMMFTAFFLIGYYILVVKCCLNWPHVDHVRIFSLSRSHEDPSAPYSTASEPRGLEEAVIKLIPVIQFKPEEGERSFSECSVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNAYCPLCRRTVSLTSQVHHHVDQVNLLLTPRLSPQGQSQNNENLIGAAEDEGGFVVIDLDGEHDRDQNLQERQELPTCRIISLSSQMKLLEEKKARKLQKVTSLGDECIGVRSKDERLSVQAMRRSFSMDSSVDRKFYEAVQEALQQPQQQNGNVLEVSTIEACDGSGRVKRSFFSFGHGSRSRSAVLPETPDFFI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00880 370 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Gma20g00880 370 SMART ring_2 140 181 IPR001841 -
Gma20g00880 370 PANTHER RING-H2 FINGER PROTEIN ATL16 36 363 IPR044600 GO:0016567|GO:0016740
Gma20g00880 370 SUPERFAMILY RING/U-box 139 188 - -
Gma20g00880 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Gma20g00880 370 PANTHER RING-H2 FINGER PROTEIN ATL16 36 363 - -
Gma20g00880 370 CDD RING-H2_PA-TM-RING 139 182 - -
Gma20g00880 370 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00880 Gma-Chr20 35101014 35102355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00880 46 352 C3H Transcription Factor Family AT1G04360 42.899 1.94e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00880 - - gmx:100812364 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00071 10 725692 726612 Gma20g00880 20 35101014 35102355 GST
Gma19g01546 19 44830986 44832136 Gma20g00880 20 35101014 35102355 PCT
Gma03g01492 03 41163981 41165015 Gma20g00880 20 35101014 35102355 PCT