Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00879 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAACAATAATAGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACCGATTCATGCTTCAAGGCGGGATCAAAAGCTTGCCGTGAAAAATTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCCCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTGCCCGTTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCAGCATATCAAGCAGGGGTGAACAAGATGGCCGTATATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCACATGATCATGAGCTCAGGCCTCCAGCTGCATAG 663 0.454 MDSLEDSGCWDFLDYSFIDQAPPDFLWSNNNNSVSTEIDIPGDAVACQENTKKRGRTDSCFKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGFMAPPVAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00879 220 CDD bHLH_AtILR3_like 66 141 - -
Gma20g00879 220 SMART finulus 67 118 IPR011598 GO:0046983
Gma20g00879 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 139 IPR036638 GO:0046983
Gma20g00879 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Gma20g00879 220 PANTHER BHLH TRANSCRIPTION FACTOR 1 220 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma20g00879 220 Gene3D - 65 145 IPR036638 GO:0046983
Gma20g00879 220 PANTHER TRANSCRIPTION FACTOR BHLH104 1 220 - -
Gma20g00879 220 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Gma20g00879 220 Coils Coil 102 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00879 Gma-Chr20 35030949 35036372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00879 51 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.421 2.91e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g00879 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00879 - - gmx:100787583 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00072 10 729694 737223 Gma20g00879 20 35030949 35036372 GST