Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00874 ATGGCGGAAGAAGAACCTTCCATAACATCGCCACCGGCAAGAACGTTACACAAGTTCCTCTCCCGCAGCGGCAAGACCGTCATCGCCGCGCAACCTCTGGCGGTGGTTCGCGCCACCACCAGCACCGGCGGCGCGCGCGTTCTCGCCGCGCCGCCGAACTCGAACGACGATCCAACACCACCGCAGGAAGAAGAAGGAGAAGGCGAAACCGGCTTCGATGCTTCTCATCATCATGAACGGATATTGTTGCAGAGAGAGCTAACGGTTTCGTTCGACGAGTTTCTCGAGGTCACCAACACGAAGGTCGCCACCGAAGAGGAGGCTCTGAAATCAGTGATGGCGCCGTTGGAAGAAGAAACTGAAGAAGGAGAGGAAGCCGAATCGTCACAGGCTCAATCAGCGCAACCGGTTCAACCGGTGCCGAGGGGACCGCAACTGTTTCGACCGGTGCAGAAGAAGAAAGCGGTTACCGGTGATGACGTGGAGGTGGTGGAGGTGCGGAAGCCTGTGGAAAAGAAGAACATTCCGAATATTTCGAATCTCGAGGACGGTGAGTTTCCGGAGGAGTCTGGGTGGTTCCTTCTCGGGAGGAAGGTTGAGGTCGCAGTTTCGACGGCCAGGGGAGTGAACAGGTTGGTGGATAATGAAATCGTTCATTTCAATTTTCCTATTCCGAGTTACTCGAGTAAGTCTCAGTGGATCGTTCGAGCGTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGGCTGTGATTCCGGTTATGCAATCTGGAAGGGTTAAGGTTCGAGGCCGGTGCATTGCTGTGCCAGATAAACTACAAATGATGCAAGAGATTATGTTTTTAGTGAGCTTTTATGTTCACCACTCTGTATTTGCTGAGCGTGTTGATACTTCTTGGAGGCTGGAGGCTTGTGGTAAAATTGATGATACTGTTTATCCACTTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTGTATTCACTCCTGAGGATATAGATTCCCGGAAGCGGTTGCTCTATCCAAAGGCATGTGCTGATCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGCGGTGAGCCCCTTCCTGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCGGCAGAAATCTATGACCTCAAGGAGAAGGAAGCCCCAGAGACACTTGTGTGTAATTTAAAGCCTTACCAGAAGCAGGCTTTACACTGGATGACTGAAATAGAGAAAGGGATGGATATTGAGAGTGTAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGCAGAAGGACAATTTATTTGAATATTTTTACTGGAGAGGCCTCTAAAAAATTTCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATACTCAGTAACCCAGGCAGGGGTAACTCAGAAAACAATGATGTGGAGAATGGAGATGATAATTTTATCACAAATAAAAGAAAGAATGCTAATACCTTACATAAATTTGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAAGTCAATGGAAGGATGAGCTTGAAACACATTCAAAGGAAGGTAGTATATCCATATTTGTTCATTATGGTGGAGCAAGAACCACTGATCCCTGGATGATCTCAGGCCATGATGTTGTCTTGACAACGTATGGTGTCCTACAAGCTGCATACAAAAATGATGGAGAGAATAGCATCTACAACAAGGTCAAGTGGTACAGGGTGGTGCTAGATGAAGCTCATAATATAAAAGCCCATCGGAATCAGACTGCCCAGTCTGCTTTTGTTCTGTCCTCACACAGCCGCTGGTGTTTAACTGGAACCCCACTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGCGTTTCATGCGTGTTGAACCTTGGTGTAACTTGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACAAAGGAAACGAAGGATAAGAAAGGAAGGCCGATACTTTTCCTGCCTCCAATTGATTTTCAGTTGATTGAGTGTGAACAATCAGAATCTGAACGGGACTTTTATGAAGCCCTGTTTGAGAGATCTAAAGTTCAATTTGATCAGTATGTCGCACAAGGAAAGGTTCTTCACCATTATGCAAATATCCTTGACCTACTAATGCAGTTGAGGCGGTGTTGTAACCATCCATTTTTAGTTATGTGCGGAAGCGATACCCAGAAACGTGCAGATTTAAGCAGACTCGCAAGAAAATTCTTTCAGACTAATACTGAATTCCCCGATGAAAGCAATCAAAATGATCCACGGCAGCAAGCAGAGTTGAACAAACTTGCAAGTAGATTACTTCTAAAATCTGCTTCTTCTTTGCACTCGGTTCAACCTCATGCATACATTGCCGAGGTTTTGGAGAATATTCAAAAGGGTGACATCATAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCGCATAAGTTTTGTAGAGAATGTCTATTTAGTTGCTGGGGCACCTCAGTGGGTGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTATTCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCGAAGCTATTTGAATTCCTGCAACGTATTCTGAACACATCAAGTGAAAAGAGTATCGTCTTCAGTCAGTGGACATCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGAATTGGTTTTTTGAGATATGATGGGAAGTTGACTCAGAAGCAGAGGGAGAAAGTTCTGGATGAATTCAATGAGACAAGAGAGAAAAGGGTTTTGTTAATGTCACTAAAAGCTGGTGGTGTGGGTTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAACCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGAGTTGTAGTGAGAAGATTCATCGTTAAGGACACAGTGGAAGATCGATTGCAACAAGTTCAAGCTAGGAAACAAAGGATGATATCTGGTACCCTCACCGACGATGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTTTTCACATGA 3300 0.4503 MAEEEPSITSPPARTLHKFLSRSGKTVIAAQPLAVVRATTSTGGARVLAAPPNSNDDPTPPQEEEGEGETGFDASHHHERILLQRELTVSFDEFLEVTNTKVATEEEALKSVMAPLEEETEEGEEAESSQAQSAQPVQPVPRGPQLFRPVQKKKAVTGDDVEVVEVRKPVEKKNIPNISNLEDGEFPEESGWFLLGRKVEVAVSTARGVNRLVDNEIVHFNFPIPSYSSKSQWIVRASTKRSGEVGRMPMEWAKAVIPVMQSGRVKVRGRCIAVPDKLQMMQEIMFLVSFYVHHSVFAERVDTSWRLEACGKIDDTVYPLLALLKMLEIKPSQKAVFTPEDIDSRKRLLYPKACADPDEAAALPLIKRRKGGEPLPEQNNDEQALSESALNKLVGAAEIYDLKEKEAPETLVCNLKPYQKQALHWMTEIEKGMDIESVERNLHPCWSAYTICKGRRTIYLNIFTGEASKKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENNDVENGDDNFITNKRKNANTLHKFEGGTLIVCPMALLSQWKDELETHSKEGSISIFVHYGGARTTDPWMISGHDVVLTTYGVLQAAYKNDGENSIYNKVKWYRVVLDEAHNIKAHRNQTAQSAFVLSSHSRWCLTGTPLQNSLEDLYSLLRFMRVEPWCNLAWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKETKDKKGRPILFLPPIDFQLIECEQSESERDFYEALFERSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDTQKRADLSRLARKFFQTNTEFPDESNQNDPRQQAELNKLASRLLLKSASSLHSVQPHAYIAEVLENIQKGDIIECSICMESPEDPVFTPCAHKFCRECLFSCWGTSVGGKCPICRQLLQKDDLITYSSESPFKVDIKNNVTESSKVSKLFEFLQRILNTSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVVVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRTARIQDLKMLFT 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00874 1099 ProSitePatterns Zinc finger RING-type signature. 878 887 IPR017907 -
Gma20g00874 1099 CDD DEXDc_SHPRH-like 415 704 - -
Gma20g00874 1099 Pfam SNF2-related domain 418 782 IPR000330 GO:0005524|GO:0140658
Gma20g00874 1099 Pfam Helicase conserved C-terminal domain 934 1046 IPR001650 -
Gma20g00874 1099 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 361 1098 - -
Gma20g00874 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 1089 IPR027417 -
Gma20g00874 1099 MobiDBLite consensus disorder prediction 115 153 - -
Gma20g00874 1099 SUPERFAMILY RING/U-box 845 909 - -
Gma20g00874 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 926 IPR013083 -
Gma20g00874 1099 PANTHER DNA REPAIR PROTEIN RAD5B 361 1098 - -
Gma20g00874 1099 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 939 1095 IPR001650 -
Gma20g00874 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 704 IPR027417 -
Gma20g00874 1099 ProSiteProfiles Zinc finger RING-type profile. 863 903 IPR001841 -
Gma20g00874 1099 MobiDBLite consensus disorder prediction 43 72 - -
Gma20g00874 1099 Pfam HIRAN domain 207 285 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gma20g00874 1099 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 472 666 IPR014001 -
Gma20g00874 1099 Gene3D - 467 705 IPR038718 -
Gma20g00874 1099 Pfam Zinc finger, C3HC4 type (RING finger) 862 906 - -
Gma20g00874 1099 Gene3D - 720 1099 IPR027417 -
Gma20g00874 1099 SMART ultradead3 411 674 IPR014001 -
Gma20g00874 1099 CDD SF2_C_SNF 925 1047 - -
Gma20g00874 1099 SMART helicmild6 963 1046 IPR001650 -
Gma20g00874 1099 SMART ring_2 863 902 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00874 Gma-Chr20 34924240 34930131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00874 181 1098 RAD5 or RAD16-like Gene Family AT5G43530 61.597 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma20g00874 SNF2_N 5.8e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00874 K15505 - gmx:100806677 2121.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00078 10 769585 772223 Gma20g00874 20 34924240 34930131 GST