Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00867 ATGGTCGCCTACACCATGTCTAACAGGGGCCTTGCTGCCCCCGCCCTATCCGTGATGGACCCCGTGGGCAGCGACAATGTTCCCGGAGGTTCCCCTGCTGGTAGAGTTTGCAACAAGCAGGAGGAAGAGAAAGCAATTATGAGGTTATTGGATGGAAGTAGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTCAAGAGGCTACGAGTGTTGAAGAGTTCTAAGCTTTCTACTTTCTGCATTTCCTACATGAATCCTACTTCAATTTGA 321 0.4766 MVAYTMSNRGLAAPALSVMDPVGSDNVPGGSPAGRVCNKQEEEKAIMRLLDGSREYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSKLSTFCISYMNPTSI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00867 106 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 99 IPR003311 GO:0005634|GO:0006355
Gma20g00867 106 ProSiteProfiles PB1 domain profile. 1 90 IPR000270 GO:0005515
Gma20g00867 106 Pfam AUX/IAA family 38 95 IPR033389 -
Gma20g00867 106 SUPERFAMILY CAD & PB1 domains 51 87 - -
Gma20g00867 106 Gene3D - 21 102 - -
Gma20g00867 106 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 36 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00867 Gma-Chr20 34729834 34730812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00867 55 93 B3 DNA Binding Superfamily AT2G46530 43.590 2.15e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma20g00867 AUX_IAA 9.8e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00867 K14484 - gmx:100804593 114.39