Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00842 ATGTTGCAGGATGTTGTCCACCCCTCAACACCGGCTGAGCAACTCCCCATTGATGAGATTTCAGGCCCGATTAGTGCTCGAATTTTCGAACTTTGCGACCCCGATTTCTTCCCACACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGTAGTAGACAACAATAAGTTCAATATCAATAGCAATAGCAGCAACATAGTCACCACTACCTCATCTAGCACTACCACAACCAGCACCACAACCAACAACAACAACAACGCAACGAACGGCAATAATCTTTCTATCTTCTTTGACACTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATCTCCATCTTTTGTCGTTCCACCACTTCTCCCAATCTCAACTCAGCAGGATCAGTTTGATTTCCCTTCAGCTCAGCCACAGGTGCAACTATCAACAGCAGCAGGTTCAATTTTGACGGGCCTCTCTCACTACCCTACAGATCCTGTGATTGCACCCCTTATTGGAGCTCCGTTACCATCTGTTTTTGATGATGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCTTCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCACCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTGGGGTCTGAACTGCAGGCACATGAATTGGACTACCAGGGAGAAAATGGTGGAATGTATTGTACAGATTCAATTCAAAGGGTGTTTAACTCCCCAGACCTTCAGGCACTTGGTAATGAGAGTCAGAAACTTGTAGCTGGGGCTGGAAGCTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAACGAAAGAAATTTCAGCAAGAAAATCAAGgcgttgttgttgttgttgttgTTGTATGCTTGCCGCAAAACTTTGGCGGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGAGCCATAAACAAGGAAGTAGCAATCATGAAGATGATGATGAAGAGATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGCGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCTTGATTTGA 1299 0.4365 MLQDVVHPSTPAEQLPIDEISGPISARIFELCDPDFFPHTLQNSEVTSSSNCCHEEKSSYATTISPPLDVVDNNKFNINSNSSNIVTTTSSSTTTTSTTTNNNNNATNGNNLSIFFDTQDEIDNDISASIDFSSSPSFVVPPLLPISTQQDQFDFPSAQPQVQLSTAAGSILTGLSHYPTDPVIAPLIGAPLPSVFDDDCISSIPSYVPLNPSSPSCSYLSPGIGVYMPPPGSLNTALSADSSGLFGGNILLGSELQAHELDYQGENGGMYCTDSIQRVFNSPDLQALGNESQKLVAGAGSSATLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKALLLLLLLYACRKTLADSRPRVRGRFAKNDDFGESHKQGSSNHEDDDEEIIVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00842 432 MobiDBLite consensus disorder prediction 374 395 - -
Gma20g00842 432 MobiDBLite consensus disorder prediction 374 396 - -
Gma20g00842 432 Pfam CCT motif 327 377 IPR010402 GO:0005515
Gma20g00842 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 432 - -
Gma20g00842 432 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
Gma20g00842 432 MobiDBLite consensus disorder prediction 87 109 - -
Gma20g00842 432 PANTHER CCT MOTIF FAMILY PROTEIN 17 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00842 Gma-Chr20 33798337 33802734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00842 306 384 C2C2-CO-like Transcription Factor Family AT5G24930 36.709 1.82e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma20g00842 CCT 2.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00842 - - gmx:100793417 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01331 10 39364872 39369091 Gma20g00842 20 33798337 33802734 GST