Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00828 ATGGCCACCCAAATGAGCAAGAAGAGAAAGTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGGGAGTTAGCCGAGGACGGATACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATCAGGGAACTTACCTCGGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATAGCACAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTAGCTGTGCGCAGGGCTTGCTATGGTGTCTTGAGGTTTGTTATGGAGAGTGGTGCTAAGGGATGCGAGGTCATTGTGAGTGGAAAATTGAGAGCCCAGAGAGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTCCAAAGGAGGAAGAAGAATACATCCAGCCTGCTCCAGTTTTGGCTGCTAATGATATTGAGGTCCCTGTTGCTTGA 711 0.4895 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIEVPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00828 236 Gene3D - 93 219 IPR036419 -
Gma20g00828 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 232 - -
Gma20g00828 236 CDD 40S_S3_KH 15 95 - -
Gma20g00828 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Gma20g00828 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Gma20g00828 236 Gene3D - 1 91 IPR015946 -
Gma20g00828 236 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 2 232 - -
Gma20g00828 236 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Gma20g00828 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Gma20g00828 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Gma20g00828 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Gma20g00828 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00828 Gma-Chr20 33395751 33397833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00828 1 226 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.823 2.05e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00828 K02985 - gmx:100799156 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01318 10 39111029 39113074 Gma20g00828 20 33395751 33397833 GST