Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00824 ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA 870 0.4414 MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00824 289 SUPERFAMILY RNA-binding domain, RBD 110 199 IPR035979 GO:0003676
Gma20g00824 289 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 92 288 - -
Gma20g00824 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Gma20g00824 289 PANTHER TRANSFORMER-2-RELATED 92 288 - -
Gma20g00824 289 SUPERFAMILY RNA-binding domain, RBD 203 288 IPR035979 GO:0003676
Gma20g00824 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 279 IPR000504 GO:0003723
Gma20g00824 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Gma20g00824 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Gma20g00824 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Gma20g00824 289 SMART rrm1_1 118 191 IPR000504 GO:0003723
Gma20g00824 289 Gene3D - 75 198 IPR012677 -
Gma20g00824 289 Gene3D - 199 289 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00824 Gma-Chr20 33244797 33252652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00824 72 287 Eukaryotic Initiation Factors Gene Family AT2G36660 27.826 3.01e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00824 - - gmx:100820203 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01910 19 48286233 48288081 Gma20g00824 20 33244797 33252652 PCT
Gma03g01866 03 44641113 44643599 Gma20g00824 20 33244797 33252652 PCT