Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00816 ATGTATTGGGGGGAAGTTATGGCTGGCCATATGGGTAGAGGTGTCATAGAGGAGCAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTTGTTGAGTATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTACCTAAGACCTGACCTCAAGAGAGGACAGATAACATCACAAGAAGAAAGCATAATTCTAGAGTTGCATACAAGGTGGGGAAACAGGTGGTCAACAATTGCCAGGAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAACGTCCCTCTGATGCAGTAGAGAAGGCTAGAAATAGACTGCTGAGGAAGCAGCAATTTCACCAGCAACAACAACAGCAGTTGCAGCAGCAGAAGGCACAACAACAACTGCAGTTCAACTTTGACGTGAAAGGCATCATGGCCTTTCTTGAAGACAACAGCCATAAAGCACCTTATATATCTCAATCTAGACTAGTGGTGAACATGCACCAAAACACCACAGAAGAGCAAGGATACTTGTATTCTATGCCCAATGGAAACTGTTCTGCTTCTTCTGCATTAGAGACCTCAGCTGAAGAAGTTTTGTGGGATGGTCTGTGGAACATAGATGATGTTCATGGCAATTTCAGTGTAGCTAGTGCAGCAAGCAAAGTTGGTTTATACAATTTAGTTGCTCCCTTCTGTTAA 783 0.4406 MYWGEVMAGHMGRGVIEEQVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITSQEESIILELHTRWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKRPSDAVEKARNRLLRKQQFHQQQQQQLQQQKAQQQLQFNFDVKGIMAFLEDNSHKAPYISQSRLVVNMHQNTTEEQGYLYSMPNGNCSASSALETSAEEVLWDGLWNIDDVHGNFSVASAASKVGLYNLVAPFC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00816 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Gma20g00816 260 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Gma20g00816 260 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gma20g00816 260 Gene3D - 80 124 - -
Gma20g00816 260 PANTHER MYB TRANSCRIPTION FACTOR 3 251 - -
Gma20g00816 260 CDD SANT 80 121 IPR001005 -
Gma20g00816 260 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gma20g00816 260 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Gma20g00816 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma20g00816 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gma20g00816 260 Coils Coil 136 163 - -
Gma20g00816 260 Gene3D - 23 75 - -
Gma20g00816 260 SMART sant 75 123 IPR001005 -
Gma20g00816 260 SMART sant 22 72 IPR001005 -
Gma20g00816 260 CDD SANT 25 70 IPR001005 -
Gma20g00816 260 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00816 Gma-Chr20 32971018 32972552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00816 18 260 MYB Transcription Factor Family AT4G13480 52.985 3.50e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00816 Myb_DNA-binding 9.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00816 K09422 - gmx:100818237 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01310 10 38923986 38926542 Gma20g00816 20 32971018 32972552 GST