Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00799 ATGGCGAGGATTTCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTGACAAATCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGATCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGATCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCATGAACTTCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAGGTGGTCTTTCGGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGGTTATGGTTAATCACAGTGATGGATATAATGTTGTTTCTTTGCTGTAATGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTGCTCAGTTCCTATCCTATTTGAATGAACGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTAGAAATTCAGGGATTTAAAGAGAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTAAGGTATAGAGTTGAAGTCATGGTTACACAAAACAATGAGAGTGGCAAATTTTTGCTCTGGGATCGTGAATGTACTGAATTGATTGGCCAAACGGCTGATGATGGGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGTTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAGATTAAAAAATGCAGTTGTACTTAAATACTCAAAAGACCTGGATTTGATCAATGCTGTTCTGGAGATGCTGGCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATGATGCTACGCATGCTGAATGTCAATTTGTGTCTGTCACAGCTGACCATGATCCAGTTGCGGGGTTACCTTTAACACCCAGAAAGCGGATGTCATCTAATGAAGCCGATGATGGGTTAGGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAGGAGCTGA 1473 0.3931 MARISDKIRSIDGSKETLKLAVRITDLWFVGTPDKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDDQFRVCEHEYKLFFIGVTVVREADLHELPFKEFRFVEFANVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLRLWLITVMDIMLFLCCNGEILSCTLWENYCAQFLSYLNERSYPASVSNSFKASKLLINDPILEIQGFKESSQVSGGSQLSSKDSFLSKAEAKTILEINAISEDVVCVTVGTISKIVMDNHSWCYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEVMVTQNNESGKFLLWDRECTELIGQTADDGNRVKIEDGDLDLNASPQALDKLLVHVLAFKVRIQSRLKNAVVLKYSKDLDLINAVLEMLADSEACSKIDPSNVDCNDATHAECQFVSVTADHDPVAGLPLTPRKRMSSNEADDGLGSSQISPAQLSSNKLTRHSHRS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00799 490 Gene3D - 5 106 IPR012340 -
Gma20g00799 490 Gene3D - 240 413 IPR012340 -
Gma20g00799 490 SUPERFAMILY Nucleic acid-binding proteins 256 390 IPR012340 -
Gma20g00799 490 CDD RPA1_DBD_A_like 19 104 - -
Gma20g00799 490 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Gma20g00799 490 SUPERFAMILY Nucleic acid-binding proteins 8 106 IPR012340 -
Gma20g00799 490 MobiDBLite consensus disorder prediction 449 490 - -
Gma20g00799 490 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 364 - -
Gma20g00799 490 MobiDBLite consensus disorder prediction 464 483 - -
Gma20g00799 490 CDD RPA1_DBD_C 252 386 IPR013955 -
Gma20g00799 490 Pfam Replication factor-A C terminal domain 274 388 IPR013955 -
Gma20g00799 490 Gene3D - 111 239 IPR012340 -
Gma20g00799 490 PANTHER REPLICATION FACTOR A 1, RFA1 11 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00799 Gma-Chr20 32493084 32510949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00799 1 364 Core DNA Replication Machinery Family AT5G08020 22.980 1.79e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00799 - - gmx:102660767 736.873