Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00787 ATGATAGTTTCTTTATGTTTAAATGACATGGCACTATACCACTGGCATTTGTTTATAGGTACCTTATTCTTGAGGCCGCAGTCTCCAGCCAACTTTTTAGGTAGTGGCTCTGCTAGTGATTTTGTATATTCTCCATCAAAGCTTGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGCGGATTTGGTTGTGTTTATAAAGGTTTGCTGATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAATGCGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCATCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATATTCCCAACGATACTCTTCATTATCATCTCCATGGTCATCCACACATTATTCATCGAGATATTAAGTCATCAAACATCCTGCTTGATCTCAACTATGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACTTGTAATGGGAACCTTTGGGTACATAGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGATTTCTTTTGATCTTTTAAGATCTTCCGATGTTGCACTTACACCATCTCCACCTCCGACTGAAGTTAAACCATTTCCATCTCATCTTGATGCACATGGACCATCCCTGGTACCTACATCTACACCATCCCCATTCCCAACTATAGCCAGCATGCCTACTGATGAAGACGTTCCAAATTTGGCCATGGAAGACCCCCCTCCTCAATGA 972 0.4084 MIVSLCLNDMALYHWHLFIGTLFLRPQSPANFLGSGSASDFVYSPSKLGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGECEFRAEVEIISRVHHHHLVSLVGYCISEHQRLLVYDYIPNDTLHYHLHGHPHIIHRDIKSSNILLDLNYEAQVSDFGLAKLALDSNTHVTTLVMGTFGYIAPEYATSGKLTEKSDVYSFGVVLLELITGRKPIDASQPIGDESLVEWISFDLLRSSDVALTPSPPPTEVKPFPSHLDAHGPSLVPTSTPSPFPTIASMPTDEDVPNLAMEDPPPQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00787 323 ProSiteProfiles Protein kinase domain profile. 70 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00787 323 MobiDBLite consensus disorder prediction 267 323 - -
Gma20g00787 323 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 158 255 - -
Gma20g00787 323 Gene3D Phosphorylase Kinase; domain 1 43 145 - -
Gma20g00787 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gma20g00787 323 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 158 255 - -
Gma20g00787 323 SMART serkin_6 70 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00787 323 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Gma20g00787 323 Gene3D Transferase(Phosphotransferase) domain 1 150 284 - -
Gma20g00787 323 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 22 157 - -
Gma20g00787 323 MobiDBLite consensus disorder prediction 289 303 - -
Gma20g00787 323 SUPERFAMILY Protein kinase-like (PK-like) 49 255 IPR011009 -
Gma20g00787 323 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 22 157 - -
Gma20g00787 323 Pfam Protein kinase domain 154 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00787 Gma-Chr20 31907779 31913761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00787 33 255 Trihelix Transcription Factor Family AT5G38560 68.110 2.51e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gma20g00787 Pkinase 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00787 - - gmx:106797670 487.263