Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00769 ATGGAAGCCATTGGTTCTGTGGATGACCTCTTGGATTTTTCATTAGACATAGGTGAGAAAGATGATGATGACGACAAACCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGCGGAGATCCATCATTGTTTAACCCATTGGTCCAGGTTGATCCAAACCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACGTTTGTTGACCTATCATCTATTCAACCTGGCACAACCAAGAACCAGAAAACAGTACTTGAGTGCAGCACAGGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTGTGATCGCCTTAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCGTCGCCCTGGCCTTGCTGAGAATTCTACACAGCAAGTCTGGTGGAGACAACCAAGTAATGAAACTTCCAAAGCAGACGAAGGGATGAAAATCTCACCCATTGGGAGAAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGGCTCGTGCCTGAGTACCGTCCTGCAAGTAGCCCAAGTTTTCGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAAGCAGAAGCAAATGGGAATGGGATAA 732 0.459 MEAIGSVDDLLDFSLDIGEKDDDDDKPRKACPSLNSKCGDPSLFNPLVQVDPNHSFSEFAEEELEWLSNKDAFPSVETFVDLSSIQPGTTKNQKTVLECSTGSSNSNNSTNSISLLNSCDRLKVPVRARSKSRSRRRPGLAENSTQQVWWRQPSNETSKADEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPSFRSDLHSNSHRKIVEMRKQKQMGMG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00769 243 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Gma20g00769 243 PANTHER GATA TRANSCRIPTION FACTOR 1 7 239 - -
Gma20g00769 243 SMART GATA_3 167 217 IPR000679 GO:0006355|GO:0043565
Gma20g00769 243 Gene3D - 169 240 IPR013088 GO:0006355|GO:0008270
Gma20g00769 243 MobiDBLite consensus disorder prediction 126 163 - -
Gma20g00769 243 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Gma20g00769 243 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Gma20g00769 243 MobiDBLite consensus disorder prediction 139 161 - -
Gma20g00769 243 CDD ZnF_GATA 172 220 IPR000679 GO:0006355|GO:0043565
Gma20g00769 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 230 - -
Gma20g00769 243 MobiDBLite consensus disorder prediction 16 35 - -
Gma20g00769 243 PANTHER GATA TRANSCRIPTION FACTOR 7 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00769 Gma-Chr20 30946065 30950329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00769 52 243 C2C2-Gata Transcription Factor Family AT3G24050 43.534 1.98e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma20g00769 GATA 8.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00769 - - gmx:100784527 426.402