Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00704 ATGTACGTACACAGCATTGGGGTTTATTGTTACGAAATTCCTGAAACGTCCTCTTCCGTGCGCGAGCAACCCTTCTCACTCAAAAAGTCACGGTTCTTCACATTCCTGACTCTCACTATATATACACTCACAGACACTAATTCTTTCTTCGTCTATGAATTTCTTTCTTTTCTGCGTCTTTACCTACCTTTTAGTACAACAATGACTCTCATGACTCCTCCACCGATGGATCAGCAACAGCAGCAGCAGGAGCACGATGAGATGCTGGTTCCTCGCTCTGACTTGCCAGAAGGTCCTCAACCTATGGAAGCAGACCAAGCAGAAAACATGAGTACAGTGGATGCTCCAACAGTGGATGATACACCAGCTGCGAGATTCACTTGGACCATTGACAATTTTTCTAGTATTCCCAAAAAATTATTTTCTGACATTTTCTGTGTTGGGGGCTATAAGTGGCGAATACTTATATTTCCAAAGGGGAATGGTGGTGACCATCTGTCAATGTATGTGGATGTTGCAGATTCAGCTACATTGCCCTATGGTTGGAGTAGATATGCCCATTTCAACTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATAAGAAAAGATTCACAACATCAGTTCAATGCACGTGAGAGTGACTGGGGTTTCATTAATTTCATGCCACTTGCTGAATTGTATGATCCTGCTAGAGGTTATCTTGTGAATGATACATGTGTTGTTGAGGCTGACATTTCTGTGCGTAAAGATATGGATTGGTCATATGATTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAACCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGGGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTAGTGTGGCAACAAAAGAGTTAACAAAGTCTTTTGGATGGGATACATATGATTCGTTCATGCAGCATGATGTCCAAGAGCTTAATAGGGTTCTTTGTGAAAAGCTAGAAGGAAAAATGAAGGGAACTATTGTGGAAGGCACTATACAGCAATTGTTTGAAGGACACCATATGAACTATATTGAATGCATCAATGTGGATTATAAATCAACAAGAAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTGGAACGACTTGAGGGTGATAACAAGTATCATGCTGAGAACTATGGTTTACAGGATGCTAGGAAGGGTGTGTTGTTCATTGATTTCCCTCCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTATGATTTTACGCGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTGCAACTAGATCTTGATAGGGATAATGGCAAATATCTATCTCCTGAAGCAGACAGAAGTATTCGCAATTTTTATACACTTCACAGTGTTTTGGTTCACAGTAGTGGGGTGCATGGCGGACACTACTATGCTTACATTAGACCAACACTATCAAATCAATGGTTTAAATTTGACGATGAACGAGTATCAAAAGAAGATCCAAAGAGGGCTTTAGAAGAACAGTATGGTGGTGAAGAAGAGTTACCTCGTATAAATCCTGGCTTCAACCACTCTCCTTTTAAATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATAAAATAATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGAATGAGATTAAAGAAAGAACAAGATGAAAAGGAGCTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCACCATAAAGGTTGCTTGTGATGAAGATCTACGTGAACAGATTGGAAATAATATACTCTTTGATCTTGTGGATTATGATAAAGTACGAAGTTTTCGTGTTCAAATACAAATGCCTTTTATGGTTTTCAAGGAAGAAATTGCCAAAGAGTTCGGTATACCCATCCAGTATCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATATAGGCCAAATAGAGCACTGACACCTCAGGAAGAAGCACAATCAGTTGGACTGCTAAGAGAAGTTTCCACTAAAGCAAATAATGCAGAGCTGAAGTTATTTTTGGAACTAGAAATGGGGCAGGATTTGCGCCCTATTCCTCCTCCTGAGAAGTCAAAAGAGAATCTCTTGCTTTTCTTTAAACTTTATGAACCTTCAAATGAGAAGCTTCGGTATGTTGGGCGGCTTTTTGTGAAGAGTAGTGGGAAGCCAGAAGATATATTGGTAAAACTAAATGAAATGGCTGGATATGCTCCTGATCAAGATATAGACATGTTCGAGGAGATAAAATTTGTGCCTAATGTCATGTGTGAACGGGTTGACAAGAAATCCACATTCTTTGGGAGTCAGCAGCTTGAGGATGGTGATATTATTTGCTTCCAAAAGTCCGTCCAAACTGGAAGTGGAGAGCGATATCGCTATCCAGATGTTCCTTCTTTCTTGGAATATGTGCACAACCGTTTGGTTGTTCGCTTTAGGACTTTGGAGAAACCAAAGGAGGATGAATTTAGTCTGGAGCTGACAAAGCTTGACACTTATGACAATGTTGTAGAAGAAGTTGCTCAACATATTGGTTTGAGTGATCCTTCTAAAATTAGACTCACATCTCATAACTGCTACTCCCAGCAACCTAAACCACAGTCTATCAAGTACCGAGGAATGGAACATTTGTCAGACATGCTGATTCACTCTAATCAGACTTCTGATATTCTATACTATGAAGTATTGGATATCCCTCTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTGCTTTCCATCATGATACCAACGATGAAGTTGTGATTCATACTATTAGATTACCGAGACATAGTACTGTGTCTGATGTAATTAATGATCTTAAATCAAAGGTAGATTTATCACATCCTGATGCAGAACTTAGATTGCTTGAAATTTTCTATCACAAGATCTATAAGATTTTCCGTGTCAGCGAAAAGATTGAGAACATTAATGATCAATATTGTGCTCTACGAGCAGAGGAGGTTCTTGAAGAAGAGAAAAACCTTGGCCCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAGCAGCAAGTTCAGAACTTTGGACATCCTTTTTTATTGGTTATCCATGAGGGTGAGACATTAACTGAAGTCAAATTGCGAATACAGAAAAAGTTGCAAGTTCCAGATGAGGAGTTTTCAAAGTGGAAGTTTGCATTTTTGTCATTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTTTCAGCTCGGTTTCAGAGGAGGGATATCTACGGTGCATGGGAGCAATATCTCGGACTGGAACACACTGACAATGCTTCAAAAAGGTCGAATGCTGCCAATCAGAATCGTCACGAGAAGGCAGTAAAAATCTATGATTAG 3555 0.3932 MYVHSIGVYCYEIPETSSSVREQPFSLKKSRFFTFLTLTIYTLTDTNSFFVYEFLSFLRLYLPFSTTMTLMTPPPMDQQQQQQEHDEMLVPRSDLPEGPQPMEADQAENMSTVDAPTVDDTPAARFTWTIDNFSSIPKKLFSDIFCVGGYKWRILIFPKGNGGDHLSMYVDVADSATLPYGWSRYAHFNLTVVNQIHSKYSIRKDSQHQFNARESDWGFINFMPLAELYDPARGYLVNDTCVVEADISVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEGKMKGTIVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAENYGLQDARKGVLFIDFPPVLQLQLKRFEYDFTRDTMVKINDRYEFPLQLDLDRDNGKYLSPEADRSIRNFYTLHSVLVHSSGVHGGHYYAYIRPTLSNQWFKFDDERVSKEDPKRALEEQYGGEEELPRINPGFNHSPFKFTKHSNAYMLVYVRESDKDKIICNVDEKDIAEHLRMRLKKEQDEKELKRKEKAEAHLYTTIKVACDEDLREQIGNNILFDLVDYDKVRSFRVQIQMPFMVFKEEIAKEFGIPIQYQRFWLWAKRQNNTYRPNRALTPQEEAQSVGLLREVSTKANNAELKLFLELEMGQDLRPIPPPEKSKENLLLFFKLYEPSNEKLRYVGRLFVKSSGKPEDILVKLNEMAGYAPDQDIDMFEEIKFVPNVMCERVDKKSTFFGSQQLEDGDIICFQKSVQTGSGERYRYPDVPSFLEYVHNRLVVRFRTLEKPKEDEFSLELTKLDTYDNVVEEVAQHIGLSDPSKIRLTSHNCYSQQPKPQSIKYRGMEHLSDMLIHSNQTSDILYYEVLDIPLPELQCLKTLKIAFHHDTNDEVVIHTIRLPRHSTVSDVINDLKSKVDLSHPDAELRLLEIFYHKIYKIFRVSEKIENINDQYCALRAEEVLEEEKNLGPHDRLIHVYHFLKDTTQNQQQVQNFGHPFLLVIHEGETLTEVKLRIQKKLQVPDEEFSKWKFAFLSFGRPEYLQDSDIVSARFQRRDIYGAWEQYLGLEHTDNASKRSNAANQNRHEKAVKIYD 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00704 1184 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 121 262 IPR008974 GO:0005515
Gma20g00704 1184 Pfam MATH domain 130 248 IPR002083 GO:0005515
Gma20g00704 1184 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 691 944 IPR024729 -
Gma20g00704 1184 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 82 1112 - -
Gma20g00704 1184 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 267 282 IPR018200 GO:0004843|GO:0006511
Gma20g00704 1184 Gene3D - 870 967 - -
Gma20g00704 1184 Coils Coil 606 626 - -
Gma20g00704 1184 SUPERFAMILY Cysteine proteinases 261 615 IPR038765 -
Gma20g00704 1184 CDD MATH 125 247 IPR002083 GO:0005515
Gma20g00704 1184 MobiDBLite consensus disorder prediction 74 105 - -
Gma20g00704 1184 Pfam Ubiquitin-specific protease C-terminal 954 1163 IPR029346 -
Gma20g00704 1184 SUPERFAMILY TRAF domain-like 121 252 - -
Gma20g00704 1184 Pfam Ubiquitin carboxyl-terminal hydrolase 266 587 IPR001394 GO:0004843|GO:0016579
Gma20g00704 1184 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 266 590 IPR028889 -
Gma20g00704 1184 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 82 1112 - -
Gma20g00704 1184 Gene3D - 751 869 - -
Gma20g00704 1184 SMART math_3 125 228 IPR002083 GO:0005515
Gma20g00704 1184 CDD peptidase_C19C 264 592 - -
Gma20g00704 1184 Gene3D Cysteine proteinases 263 591 - -
Gma20g00704 1184 ProSiteProfiles MATH/TRAF domain profile. 123 247 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00704 Gma-Chr20 27113331 27181382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00704 K11838 - gmx:100337655 2248.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01176 10 33686508 33713340 Gma20g00704 20 27113331 27181382 GST
Gma19g01938 19 48536858 48538460 Gma20g00704 20 27113331 27181382 PCT
Gma03g01897 03 44887745 44889844 Gma20g00704 20 27113331 27181382 PCT