Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00696 ATGGAGTTTAAGCAACATGAGGAAACTGATTTGAGGATGCTTGCAGCAACAACGAGTTACAATGACTTTGGAATACCGCCCTCAAGTCAAGGCGAAGAGGAGCCAGTGGCGGCGGCGATACCAGTGGTGATTCCAATGACCCCAACACCACCCACCCTGGCTCAAAAAAATGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCATCAAAACTGGCGTCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTAGGCGAGGAGGGAACCCTGGATGCGCTAAAATGCCTAGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCTGGTGCCTTACCACCGCCACTCGCCGTTGCCGTTGGCAGCGTACTATGGGGAGCAGGTGGGCTACCCCCATGTGCAAGGGCAACAATGCACCACACTGGCACTCCCTTCCAGGTCAAGGGGCAGTGGTGGGGCCCAGTCCTCGAGGGAGGACATGGAAGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAAAGGGGAAGATGTTGGCCTTTGCAGAAAAGCTTGGCTGGAGGATTCTGAAGCACGATGAGAGTGTCGTGCAGGAGTTTTGTGCCCAAACTAGCATCCAACCTCGTGTGCTTAAGGTGTGGGTGCACAACAACAAGCACACCTTAAGTAAGAAGCTCTAG 753 0.5339 MEFKQHEETDLRMLAATTSYNDFGIPPSSQGEEEPVAAAIPVVIPMTPTPPTLAQKNDNEKYHECLKNHTIKTGVHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYLVPYHRHSPLPLAAYYGEQVGYPHVQGQQCTTLALPSRSRGSGGAQSSREDMEAVSDPTSGATPHGGSSKKRFRTRFTQEQKGKMLAFAEKLGWRILKHDESVVQEFCAQTSIQPRVLKVWVHNNKHTLSKKL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00696 250 MobiDBLite consensus disorder prediction 152 190 - -
Gma20g00696 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 249 - -
Gma20g00696 250 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Gma20g00696 250 Gene3D - 172 249 - -
Gma20g00696 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 52 249 - -
Gma20g00696 250 SUPERFAMILY Homeodomain-like 174 248 IPR009057 -
Gma20g00696 250 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Gma20g00696 250 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 243 IPR006455 -
Gma20g00696 250 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00696 Gma-Chr20 26847357 26848109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00696 61 247 ZF-HD Transcription Factor Family AT4G24660 48.691 4.03e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma20g00696 ZF-HD_dimer 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00696 - - gmx:100817719 506.908