Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00657 ATGAGTCTTCCACAAACTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCAATACTCTTCTCCATCATTCTCTTCCTCTTGTTTTACTTGTTCTACCTTAAGAGAAGGGCTTCCTCTCTATCTTCCTCTTCTCACTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCGTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTGGCAAGGGATTCACTATGTTGTGTTTGTCTGGGGGAATTTGAGCTGAAGGAAGAGGTGCTACAGATACCCTATTGCAAGCACGTGTTCCACTTCGAATGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAACCCAGCACCCCCTATTAATATTATATCATCAGACCCACCCCAGCATGGTGCTATCATTTCGGACTCCCCATTACAATTGCCACCTCAGCCACAAGACCATCAAGAAGAAGTTGTTGGTGCTTCCTCAAATGCTGCTAATTTGTCAAGGGAATGA 636 0.4465 MSLPQTATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSHLLPRTIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSLCCVCLGEFELKEEVLQIPYCKHVFHFECIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISSDPPQHGAIISDSPLQLPPQPQDHQEEVVGASSNAANLSRE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00657 211 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Gma20g00657 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
Gma20g00657 211 MobiDBLite consensus disorder prediction 185 211 - -
Gma20g00657 211 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gma20g00657 211 SMART ring_2 108 149 IPR001841 -
Gma20g00657 211 SUPERFAMILY RING/U-box 86 160 - -
Gma20g00657 211 Pfam Ring finger domain 108 150 IPR001841 -
Gma20g00657 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Gma20g00657 211 MobiDBLite consensus disorder prediction 179 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00657 Gma-Chr20 25293616 25295970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00657 1 211 C3H Transcription Factor Family AT4G10150 34.101 1.77e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00657 K19039 - gmx:100794298 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00657 20 25293616 25295970 Gma13g00030 13 786108 787960 GST