Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00638 ATGGACAACGCAGCTGCTGAACTTCAAAGTGTGGCAGCAGATCCTGCTCTTCTTCTTCACCATCAGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCGTTGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATGGTCCTATATTGATATCAAGTCCAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCATCAAGTCCACTATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGATGTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGCACTCGTGCACTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTTCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAATGCCATCCTCTCAGTCCTTCTCTCCTCATTCACTGGATTTGGGATTGCAATCAGCTTGAATACGCTGCTAACAGAGTATGTTAGATGGAAAACAAGAAGACAGATTCAATCTTCTACGGCACGGCAGCAGCGCCGTGATCATGCACTGCAGTAG 1422 0.4304 MDNAAAELQSVAADPALLLHHQTCAGNGIGDSTSLIPESSRRPSLSSLQIPALSVENALSSFNKTDGPILISSPGSSRGLPPRPNSARVIKSTMKTLLSERSFRAKNSSMDSERTVLIIPDGSPSDGPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTANSGPENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGSISADNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKITNPQTVTRQPLNAPEPQQREVTSYRQDVSVLVLVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFSIVILFAHVFYTILNVNAILSVLLSSFTGFGIAISLNTLLTEYVRWKTRRQIQSSTARQQRRDHALQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00638 473 PANTHER OS02G0165000 PROTEIN 27 469 - -
Gma20g00638 473 CDD RING_CH-C4HC3_MARCH 254 302 - -
Gma20g00638 473 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Gma20g00638 473 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Gma20g00638 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 310 IPR013083 -
Gma20g00638 473 PANTHER OS02G0165000 PROTEIN 27 469 - -
Gma20g00638 473 SUPERFAMILY RING/U-box 250 305 - -
Gma20g00638 473 SMART ringv_2 253 302 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00638 Gma-Chr20 24083710 24096565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00638 237 308 C3H Transcription Factor Family AT2G37950 45.205 7.88e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00638 - - gmx:100779396 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00638 20 24083710 24096565 Gma14g00029 14 294508 301199 PCT
Gma20g00638 20 24083710 24096565 Gma02g02897 02 54310778 54317937 PCT
Gma14g00029 14 294508 301199 Gma20g00638 20 24083710 24096565 PCT
Gma02g02897 02 54310778 54317937 Gma20g00638 20 24083710 24096565 PCT