Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00607 ATGGGTCGGTCCAGAGTTGCGTTGCGCTCCGCTGACGATGACCCAAACCACAGATCAAAGAGAAAAAAGGCTGCTCTGAATGTAGAAAATTCAGAAACCTTACCTACAGGCCAAGGAGTAACTACTAGCAAGGTATCTCTCTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGCTGTCTGTCAAGATTTTGACCTCTGCTTAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCTCACAAAAGCAATCATCCATATCGGATTATGGATAATCTATCTTTTCCACTTATATGTACAGATTGGAATGCAGATGAAGAGTTGTTACTTCTAGAGGGCATTGAAACGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAACCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCGCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGGAAGAACAAAGTGGAACTCTGTGCCATGGCGAAGGGACATGAAGCCAAGAAAGAATTTTCTCTGACTGCAGAGCTTACTCTGAAAGAAGAAGCTTTGTTCACTGATCGAATAAACTATGAAGAATCAAAGAATGCAGAAATCAATAATCAAACTATGTCTAGGTTAACCTCAGCATGTGGCAAAGCTTACCCAAGTACAATTAAGAAGGCATCCAACGTGATCCAAAATAATGGTGGAGTTAAGGTGGAAGAATGTAAACATTGGCTAGTTTAG 774 0.4018 MGRSRVALRSADDDPNHRSKRKKAALNVENSETLPTGQGVTTSKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCLECFSVGAEVTPHKSNHPYRIMDNLSFPLICTDWNADEELLLLEGIETYGFGNWNEVAEYVGTKTKSQCIDHYNAVYMNSPCFPLPDLSHVMGKNKVELCAMAKGHEAKKEFSLTAELTLKEEALFTDRINYEESKNAEINNQTMSRLTSACGKAYPSTIKKASNVIQNNGGVKVEECKHWLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00607 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gma20g00607 257 SUPERFAMILY RING/U-box 48 111 - -
Gma20g00607 257 Gene3D - 41 96 IPR043145 -
Gma20g00607 257 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gma20g00607 257 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gma20g00607 257 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Gma20g00607 257 SMART zz_5 44 89 IPR000433 GO:0008270
Gma20g00607 257 MobiDBLite consensus disorder prediction 1 33 - -
Gma20g00607 257 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gma20g00607 257 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 218 - -
Gma20g00607 257 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Gma20g00607 257 Gene3D - 101 153 - -
Gma20g00607 257 SMART sant 104 153 IPR001005 -
Gma20g00607 257 CDD ZZ_ADA2 48 96 IPR041983 -
Gma20g00607 257 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 218 IPR034318 GO:0003713|GO:0006357|GO:0035065
Gma20g00607 257 MobiDBLite consensus disorder prediction 1 27 - -
Gma20g00607 257 CDD SANT 119 148 IPR001005 -
Gma20g00607 257 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
Gma20g00607 257 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00607 Gma-Chr20 21192584 21198298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00607 1 254 EF-hand Containing Proteins AT3G07740 50.000 4.34e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma20g00607 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00607 K11314 - gmx:100811839 513.457