Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00591 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGACGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGCGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATTTCACTTTGTCAGAATTGCGACTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCGATATGGTCATTTGTGTTAGAAATCGCTGCCATAAGTGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGTGTGTTGGTGTTCCTCCGGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACCGATCTACCTGCTTTGAACAAGTCTTTGGTTGGTGCATCTTTGATGCCTGAATCAAGCTCCGAACCTTGTATTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATCTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGGCATGTCTGCTGGAGATTCCAATTGTCAGGAAGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCGTCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACTGGAAGGCAAACTCAATCAAACCTTTCTTTTTCTGGTGTTACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCGGAGAATTCCCTACAATCCGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTTAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCACAACCAGAAGCTGCTGA 1230 0.4472 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTCEQELGLMSINENKCVGVPPEDQNVSGSDEVTDLPALNKSLVGASLMPESSSEPCILDQPAGPTNECLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALSHSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILSTKTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00591 409 CDD Bbox1_BBX-like 4 47 - -
Gma20g00591 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Gma20g00591 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Gma20g00591 409 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gma20g00591 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma20g00591 409 CDD Bbox1_BBX-like 47 90 - -
Gma20g00591 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Gma20g00591 409 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gma20g00591 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma20g00591 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00591 Gma-Chr20 20279495 20287445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00591 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 57.007 7.34e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma20g00591 CCT 3.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00591 - - gmx:100796748 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00591 20 20279495 20287445 Gma13g00091 13 2858648 2863177 GST