Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00587 ATGTTCAGAGGAAACAACGACGACGAGTTTGAGTTTGACGGTGGCTTCGACTTCGACAAGGAGGAGGCACTGTATAAAGAGTTGGAGACCCTCATTCATTCAGAGAACACTGCCCCATCGATGATGTTTCCGTTGGAGGACGCCACCCATGTTCACAGTGGTGATTCTGATTCTGATGGTGGCTCCGACAACAACAAGCTGCAGGTGTTTGAGTTGGAGAACAGCCTCGTTCAACTTCCTCCCAAGTTGTCATCTTTGTCAGTGCCTCCCCCGACGGAATCGATGTTGCCGCATACACAGTTTCACGGCGGCTTCGATGAGTGGGACGACACCCTCGTTTACCTTCCTCCGATAGAAGAAACCCTCGATCAGTTAGAGAACACTGCCCCAAGGCTTCTTTCTCCGTCGGCCGAAGAAACCCTCGATCACCTTCTTTCCCTTTCGACTCCGATGTTGTTGCAAGAGTTGTTGGAGTCAAAGAACACTGCCCCTGCCCCTAGCCTTCTTCCCCTATCCACTCCGATGTTGTTGCAAGACACCCTTGTTCACCTTCCACCCCTGTCACTGCCAGACAACACTTCACCTAGGGTATTCACTCCGGCAGGGCACATCACCCTTCTTCCACAGACACAGACAGCGAACCGACCCTCCACTTCATCGGCATCATCATCTCACAATCGCTGCAACAGATGGACCAATGAAGAACACATGTTATTTCTTCAAGGGCTTGCAATCTATGGCAAGGGAGGTTGGAAGAATATTGCAAGGTATGCTGTTAAGACTAGAACCTCAACCCAAGTTGCTAGTCATACCCAAAAATACTTTCTTCATCTGCGAGCCTCAAACAAAAAGGCAAAAAGAAAGAGCATTTATGACATGACCTTGCAAGATCAAGTTCCACCACCTCACCAACATTGGGTTTTGCCTCCAAATCTTGCAACATACTGA 948 0.4916 MFRGNNDDEFEFDGGFDFDKEEALYKELETLIHSENTAPSMMFPLEDATHVHSGDSDSDGGSDNNKLQVFELENSLVQLPPKLSSLSVPPPTESMLPHTQFHGGFDEWDDTLVYLPPIEETLDQLENTAPRLLSPSAEETLDHLLSLSTPMLLQELLESKNTAPAPSLLPLSTPMLLQDTLVHLPPLSLPDNTSPRVFTPAGHITLLPQTQTANRPSTSSASSSHNRCNRWTNEEHMLFLQGLAIYGKGGWKNIARYAVKTRTSTQVASHTQKYFLHLRASNKKAKRKSIYDMTLQDQVPPPHQHWVLPPNLATY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00587 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 279 IPR017930 -
Gma20g00587 315 Gene3D - 229 280 - -
Gma20g00587 315 ProSiteProfiles Myb-like domain profile. 223 275 IPR001005 -
Gma20g00587 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 229 277 IPR006447 GO:0003677
Gma20g00587 315 CDD SANT 230 270 IPR001005 -
Gma20g00587 315 PANTHER TRANSCRIPTION FACTOR KUA1 213 302 - -
Gma20g00587 315 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 213 302 - -
Gma20g00587 315 Pfam Myb-like DNA-binding domain 229 275 IPR001005 -
Gma20g00587 315 SMART sant 227 277 IPR001005 -
Gma20g00587 315 SUPERFAMILY Homeodomain-like 228 279 IPR009057 -
Gma20g00587 315 ProSiteProfiles SANT domain profile. 226 282 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00587 Gma-Chr20 20030119 20031151 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma20g00587 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00587 - - gmx:102659563 587.415