Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00542 ATGGCTTTTTGGGGAGTCGAAGTAAAACCGGGAAAGCCTTTTTCTCATAAACATGACCCCTCCAAAGGACGCCTCCATATTTCGATGggcactttgGGGTTGGGCACTGCAATAGCAAAAAGCACTCTGCAGTGCAATGTGGGAAACAGGAGCCCTGTGTACCTGTGCTCTCTCTATCCCGGAAAAACCGAGTCGTTGCAGTTAAATTTAGAGCTCGAGGAAGTTGATGAAACTGTTGTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGTTACTATCTCGTCACTGCCCGCAACTCCAATCTCGTTGATGATTCGGAGTCATTTGGGGAGGACATTGCAGATACAGAAACAGAGAAATCTGATTACAGTGAAGATGAGTATGATGATAGTTTTATTGATGATGACGGTGTTCCAGAGGCTTTCCTACCATCTCCTATTTCTGAAGAAGAGGAAGCTTCTCATGATAGCAGAGAAAAAGGTAGGAAAGGCAGCCTTAGACGGCTGAGGAAAAAGTACCAGTCAGTAGAGTCTGATGATGATGGCCGTCACGAAGAAAAGATAATTGCTGATGACAGTATGGATGACCAAACCCAGGAAATCAAAGATGATGAAGATATCCTACCTATTTCATCTCTTTACAAGAATAAAGCCTCTCAAAGGGTCTTGGACGAGGAAATGGATGCTAGTGTTGACAGACAGGCAGGTGATGCCAGCAACAAGAATGGTGAAGATGGTGGAAATAGTATTGTTGAAACAAATTTAAAAGCTGACCATGACCTTGTAGATAGTCAGACGCTCAGGGAAGCTCAACCCTCAAACCACTTGGTAGATCCTTGCATTGTTCTGGATGTTGGGGATATTAAAAATTTAAAAAAGAAAAAGAAGAGAAAGGGAAAAGAGATTGATAGCTCCAGTAATGATCATTCTATCAAACTAGATAGTGGTATAGGAGGTGAGCCAAAAATGGAAAAGATGACCCAGGATTTTGTGGCAGGAAACAAACAACAGCAGCATGATGATGATAAGGATGCCAATATTTCAGGCAATGTTGCATTGCCTTCTGCTGACACAGGTCCTAAAAAAAATAGAACAAAGAAGAAAAAGAAAGAACAGGTAAACAAAAGTGACAACGGATATCAAGAAGGTATCATCCAAGAGGACAAAGCCAAAAGAGATGCAGCAGAGTCCCAGAATCTGATCCATAAAGTTTTTGCAGAAAAAGAACTGCATGAGAATCTAACTAATGAGAAGAGTGTGGACAATGGTGCTCATGAGTTTCCTGATGGAAATCTATCTGATGATAGAAAAGTTAAGAAAAGGAAGAAAATGAGTAAGAGTCCGGGCAATGGGGAAGTTGCAAATTCTGATATGCCTGTATCTGTTGAGCAAAGTGGTGAAACTGAGATGATGGAGGAAGACAGAAATAAGAGGGAAGATGCAAAGCCTTCCCAAGTTAGAACATTGGCAAATGGACTAGTTATTCAAGAACTAGAAAAGGGGAGGCAAGATGGAAAAATAGCTGCTTTGGGGAAAAAGATCAGCATCTATTACACCGGCAAGATGAAGGAAGATGGAGTAGTATTTGCATCAAATGCTGGCCAAGCTCCTTACAAATTTCGCCTTGGCAAAGGAAAAGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAGAAGAGAAGACTTGTAATTCCACCATCATTGACGTCTGAGAGTGATGAACATTGTGCCAAGATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA 1806 0.4142 MAFWGVEVKPGKPFSHKHDPSKGRLHISMGTLGLGTAIAKSTLQCNVGNRSPVYLCSLYPGKTESLQLNLELEEVDETVVFSVIGPRSIHLCGYYLVTARNSNLVDDSESFGEDIADTETEKSDYSEDEYDDSFIDDDGVPEAFLPSPISEEEEASHDSREKGRKGSLRRLRKKYQSVESDDDGRHEEKIIADDSMDDQTQEIKDDEDILPISSLYKNKASQRVLDEEMDASVDRQAGDASNKNGEDGGNSIVETNLKADHDLVDSQTLREAQPSNHLVDPCIVLDVGDIKNLKKKKKRKGKEIDSSSNDHSIKLDSGIGGEPKMEKMTQDFVAGNKQQQHDDDKDANISGNVALPSADTGPKKNRTKKKKKEQVNKSDNGYQEGIIQEDKAKRDAAESQNLIHKVFAEKELHENLTNEKSVDNGAHEFPDGNLSDDRKVKKRKKMSKSPGNGEVANSDMPVSVEQSGETEMMEEDRNKREDAKPSQVRTLANGLVIQELEKGRQDGKIAALGKKISIYYTGKMKEDGVVFASNAGQAPYKFRLGKGKVIEGWDVGLEGMQVGEKRRLVIPPSLTSESDEHCAKIPPNSWLVYDFELVKVH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00542 601 SUPERFAMILY FKBP-like 466 600 - -
Gma20g00542 601 Gene3D - 462 601 IPR046357 GO:0003755
Gma20g00542 601 MobiDBLite consensus disorder prediction 414 440 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 172 198 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 451 465 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 470 486 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 414 487 - -
Gma20g00542 601 Gene3D Nucleoplasmin core domain 1 100 - -
Gma20g00542 601 Coils Coil 290 310 - -
Gma20g00542 601 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 262 - -
Gma20g00542 601 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 342 601 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 116 138 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 372 398 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 116 207 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 221 253 - -
Gma20g00542 601 Pfam Nucleoplasmin-like domain 3 96 IPR041232 -
Gma20g00542 601 MobiDBLite consensus disorder prediction 151 165 - -
Gma20g00542 601 MobiDBLite consensus disorder prediction 294 398 - -
Gma20g00542 601 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 510 598 IPR001179 GO:0003755
Gma20g00542 601 PANTHER PEPTIDYLPROLYL ISOMERASE 342 601 - -
Gma20g00542 601 PANTHER PEPTIDYLPROLYL ISOMERASE 1 262 - -
Gma20g00542 601 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 513 601 IPR001179 GO:0003755
Gma20g00542 601 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00542 Gma-Chr20 13688574 13694896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00542 513 598 Calmodulin-binding Proteins AT5G48570 40.230 5.63e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00542 K14826 - gmx:100798135 1123.23