Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00539 ATGGGGCGCAAAGAGAAGCAGAACGCGAAGGCAATAGATGAGGAACACGACGTAGTAAATTTTAACGGCGCTTCAACGCCGTCCCTCGTTTTCAGCAGCGACGACGATGAAGCCAACCAAGATCTCAGCCTCAAGATCGTCGAAAAGGCCATGCGAATGCGCGCCGCCAAACACGCCCCAAACGACGACGTTTCTTCTCCGTTTTCGCAGAAATCCGAACTCGCAGTGCCCCTAAACGACGTCGTTTCGGATTTGCCCAGCGCAATCGCTGATTCCGAAGTGACGGAAAAGAAGAAAACGGCCAAGTTGAAGAGGGAGGCGGCTGGGGATCAAAGTGTTGTTATAGCGGAGGAGCAAGAGATGGAGGAGACAAGCAATGCTACAGAGAATCACGAGTTTGTGGAAGGAAGCCCGGTTCTGATAGGCCACAATATGGTTCTGCGAAAGCTGCTTCGGGGTCCAAGGTATTTTGATCCACCGGATAGTAGTTGGggagcatgtttcaattgtggtgaggatggtcatgctgctgtgaactgttcagcagcgaagcggaagaaaccatgctatgtttgtggtggtttgggacacaatgcaagacaatgcactaagGCGCAAGATTGCTTTATCTGCAAGAAAGGTGGTCACCGTGCTAAAGACTGTCTGGAGAAGCACACAAGTAGATCAAAAAGTGTTGCTATTTGCTTAAAGTGTGGAAATTCTGGGCATGATATGTTTTCATGCAGGAATGATTATTCACCAGATGATCTCAAGGAAATTCAATGTTATGTCTGCAAGAGAGTTGGCCATTTATGCTGTGTCAATACTGATGATGCAACACCAGGAGAAATTTCTTGTTACAAATGTGGTCAGCTGGGTCACACTGGTTTGGCATGTTCAAGGTTGCGGGATGAGATTACAagtggagccacacccagttcatgcttcaaatgtggtgaagaaggacattttgcccgggagtgcACAAGTTCTATCAAGTCAGGGAAGAGGAATTGGGAATCATCACACACAAAAGATAAAAGATCCCAAAAAGAAAATGATTACATGGGAAATAGATCTGCATCTAATGATATGGTTGGGGCTCGCAGAAAGAAACagcatcctGAAGAATTCTTTCCTCCCATGTCCTCAAGGAGCAATGGTTATAGGTCTCTAGGGACACCATCTTCTAGAAACAATAAAATTCATTCATTTGGTGGTGGAAGTCACACTCCAAGTTATAAATCTTCCAAGGTATGGAATGATCATGCAGGAACTTCAATGTCTCAAGGATCAGCCAGGTCAAATCATCATAGATTTTCAGCATCAAGTAAATCGACATCGATCTCTGTTTTGAATTGGATCGGGTTCCCCAGTTCTTTTGTTGCAATGCCTCCTAAAGCCAAACGTTCAAAAGAGCTACCATCCCGTGGCATATCAAATTTTATGCCCCATGCTTCATCTCAAGGACATTCCACCTCTGTGGAGCCACCACTGCAGCTGTCAGAGTTGGCACAACCCGTGCGCCTACTATTACCCTTAATCCATCATCAGTTCCTACTGCTCAAAATCTGCTTTCATTACCAAATCCACAGTTACATACAATGCCATGTAAAGACAAAAGATCAAATAGGAGACTATTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTGCCGTTGTCAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAgtgccagagccagCAATGCTTCGTAAAGCCAAACATTCAAAAAGGAGGGGGTTTCATGGCACATCAAATTTGATGCCTCATTCTTCATCGCAAGTACATTCCACACTTGTGGAGCCACCACTACAGCCTTCACTGGCACCCCAATCTTGTGTTCCTTCTTATTCCACTGCTATTCCACCGTCAATTCCTACAGCTCAAAATCTGGTTTCAGCATCACATCCACCATTGCGTACAATGCCTCATAAAGCCAAACATTCAAAAAAGAGGGGATCTCATGGCATATCAAATTTGGTGGCTCATGCTTCATCTCAAGCACAATCCTATGCTCCTACTCTCTCCCATATTCCATCATCAATTCCTACAACTCTGGATCCACTTTCACGCTCATTGCTTCCTCAGAATGTATTTTCAAGCATACTAAATTTGATTTGTCAAGCTGCATATCAAGGATATTCCATGCTTGAGGAATTACCACAGCATTCTTCAAAGTTGGCACAACCTTTTGCACCTACTATCACTGATATTCGACCATCAATTCCTATTGCTCAAGATCTGGTTTCACAATCGAATATACCCTCGTGCTCAATGCTCCGAAAATCCAAACGTTCAAAAAAGAGAGTATCTCATGCGATATCAAATTTGATGCCTCATGCTTCTTCTCAAGGGCATTCCAAACCCATGGAGCTGCCACTACAGCCTTCAGAGTTAGCACAACCATGTGCTCCTCCTGTCGTCCTTGTtccatcatcaattagtgtaactcaagatccagttttaccatcggatccatcatcaattcctTATCAGGAGTTATGTCGGAGGAATGCTGAAGTCAGACAAAAGCAAATTGTTCCACACACAAGTGTGGCTAAACTGTTGTCGAGGAAACACATGAGATGGTCATATACTTTAGGAAGTAGAGCTTGGACGTCCCGTTAG 2742 0.4012 MGRKEKQNAKAIDEEHDVVNFNGASTPSLVFSSDDDEANQDLSLKIVEKAMRMRAAKHAPNDDVSSPFSQKSELAVPLNDVVSDLPSAIADSEVTEKKKTAKLKREAAGDQSVVIAEEQEMEETSNATENHEFVEGSPVLIGHNMVLRKLLRGPRYFDPPDSSWGACFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQCTKAQDCFICKKGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEITSGATPSSCFKCGEEGHFARECTSSIKSGKRNWESSHTKDKRSQKENDYMGNRSASNDMVGARRKKQHPEEFFPPMSSRSNGYRSLGTPSSRNNKIHSFGGGSHTPSYKSSKVWNDHAGTSMSQGSARSNHHRFSASSKSTSISVLNWIGFPSSFVAMPPKAKRSKELPSRGISNFMPHASSQGHSTSVEPPLQLSELAQPVRLLLPLIHHQFLLLKICFHYQIHSYIQCHVKTKDQIGDYFERRPILKSKAAVVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPAMLRKAKHSKRRGFHGTSNLMPHSSSQVHSTLVEPPLQPSLAPQSCVPSYSTAIPPSIPTAQNLVSASHPPLRTMPHKAKHSKKRGSHGISNLVAHASSQAQSYAPTLSHIPSSIPTTLDPLSRSLLPQNVFSSILNLICQAAYQGYSMLEELPQHSSKLAQPFAPTITDIRPSIPIAQDLVSQSNIPSCSMLRKSKRSKKRVSHAISNLMPHASSQGHSKPMELPLQPSELAQPCAPPVVLVPSSISVTQDPVLPSDPSSIPYQELCRRNAEVRQKQIVPHTSVAKLLSRKHMRWSYTLGSRAWTSR 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00539 913 MobiDBLite consensus disorder prediction 468 495 - -
Gma20g00539 913 ProSiteProfiles Zinc finger CCHC-type profile. 189 204 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 Gene3D - 207 255 - -
Gma20g00539 913 MobiDBLite consensus disorder prediction 336 440 - -
Gma20g00539 913 MobiDBLite consensus disorder prediction 1 37 - -
Gma20g00539 913 ProSiteProfiles Zinc finger CCHC-type profile. 315 330 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 314 330 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 285 301 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SMART c2hcfinal6 234 250 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 MobiDBLite consensus disorder prediction 338 354 - -
Gma20g00539 913 ProSiteProfiles Zinc finger CCHC-type profile. 286 299 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 Gene3D - 310 351 - -
Gma20g00539 913 MobiDBLite consensus disorder prediction 481 495 - -
Gma20g00539 913 Gene3D - 93 206 - -
Gma20g00539 913 Gene3D - 256 303 - -
Gma20g00539 913 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 1 447 - -
Gma20g00539 913 SUPERFAMILY Retrovirus zinc finger-like domains 280 331 IPR036875 GO:0003676|GO:0008270
Gma20g00539 913 Pfam Zinc knuckle 188 204 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 Pfam Zinc knuckle 314 330 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 Pfam Zinc knuckle 166 181 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
Gma20g00539 913 SUPERFAMILY Retrovirus zinc finger-like domains 162 205 IPR036875 GO:0003676|GO:0008270
Gma20g00539 913 MobiDBLite consensus disorder prediction 21 37 - -
Gma20g00539 913 MobiDBLite consensus disorder prediction 1 17 - -
Gma20g00539 913 MobiDBLite consensus disorder prediction 384 440 - -
Gma20g00539 913 SUPERFAMILY Retrovirus zinc finger-like domains 205 251 IPR036875 GO:0003676|GO:0008270
Gma20g00539 913 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 1 447 - -
Gma20g00539 913 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00539 Gma-Chr20 13335356 13353551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00539 548 596 C2H2 Transcription Factor Family AT4G06634 61.224 4.42e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00539 - - gmx:100794448 783.867