Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00532 ATGGCATGTGTTGCTGATAAAATTAAGTTGATAGATGGATCAAGGGAAGCTTTTAAGCTTTCTGTAAGGATCACTGATCTTTGGTTCATTAGGATTCCCGAAAAGTCTGAACAAGTCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAACAGGATCAGTTGAAGTCTCGCAAGGCTAATTTGAAAGAAAATTTAACTTATGTGATGCATAATTTTAAAGTTATGAAGAATGATGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATGTTTTACTGGAGTTACTGTTGTTAGGCAATCTGATATGGAACACTTACTTTTTAGGAAATTCAGATTTGTTGATTTTTCCAGTGTCATTGCTGGTCATTTTCAAATTGGACTCTTGGTGCTATCCTGCACACTCTGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGACATTGAAGATGAAAGACTGGTCGTTATTCTTTTGACATATGCCAGGATTAAGGAAGCACAGGGATCATATCTGCTGTCGGTCAGTAATTCTTTCAAGGCGTTTAAACTCATGATCAACAACCTTGTGTTGGAAATTCAAGAATTTAGAGAGAGATCAGTTTTGACGCCTATTGGACAAGGGAGTTCACAGGTTTCAAGGTCATCTCAATTATCATCAAAAGATGTGTTTCTGTCAAAGGCTGAAGAGAAAAATATCTCTCAGATTAATGCCACTTCCGAGGAAATTGTTTGTGTTAGTGTCGCCAAGATTACAACAATGGTGATGGACAACTATTCATGGTGCTATCTGGCTTGCGGTCAATGTTATAAAAAAGCTGACATAGAAACTGTGTCGTTCACATGTCCGTGTGGCAAAGACAACGATCAACCTTTACTAAGGTATAGAGTTGAAGTGATGGTTAATCACCAGGGTGAACAGACCAAATTTTTTATCTGGGACCGTGAATGTGCACAGTTAATTGGTCAATCAACGGATGAAGTCAATAGACTCAAAATAGAAGATGGCGATGTTGATTTAAATGCCTCTCCTCAAGCACTTGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTTTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATGTTGTGCTGGATATGATTCCCGATAGTGAGTCATGTTGCAAGATCGAGAATTCAATACTTGAGTCGACCGATCCTACAGAGCTTGAATCTCAATCTATGTCTGTTACCGCTGATCATGACTGTTCAATGCTTAACTCAAGTGAGCCTACAGAGCTTGAATCTCAATCTGTGTCTGTTACAGGAGATTATGACCCTCTTCTCAGGATTCCATTGACACCAACTAAGCGCGTATCTTCTGATGAGTTGGATGATGAGTGA 1422 0.3826 MACVADKIKLIDGSREAFKLSVRITDLWFIRIPEKSEQVEMVVVDSDGDEIHVVCKQDQLKSRKANLKENLTYVMHNFKVMKNDGKFRVCDHEYKLCFTGVTVVRQSDMEHLLFRKFRFVDFSSVIAGHFQIGLLVLSCTLWENYCLQFLSYLNDIEDERLVVILLTYARIKEAQGSYLLSVSNSFKAFKLMINNLVLEIQEFRERSVLTPIGQGSSQVSRSSQLSSKDVFLSKAEEKNISQINATSEEIVCVSVAKITTMVMDNYSWCYLACGQCYKKADIETVSFTCPCGKDNDQPLLRYRVEVMVNHQGEQTKFFIWDRECAQLIGQSTDEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNFVVLKYSDESDLINVVLDMIPDSESCCKIENSILESTDPTELESQSMSVTADHDCSMLNSSEPTELESQSVSVTGDYDPLLRIPLTPTKRVSSDELDDE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00532 473 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Gma20g00532 473 Gene3D - 5 103 IPR012340 -
Gma20g00532 473 PANTHER REPLICATION FACTOR A 1, RFA1 11 331 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma20g00532 473 MobiDBLite consensus disorder prediction 411 473 - -
Gma20g00532 473 CDD RPA1_DBD_B_like 136 206 - -
Gma20g00532 473 Gene3D - 104 208 IPR012340 -
Gma20g00532 473 SUPERFAMILY Nucleic acid-binding proteins 15 105 IPR012340 -
Gma20g00532 473 SUPERFAMILY Nucleic acid-binding proteins 238 374 IPR012340 -
Gma20g00532 473 MobiDBLite consensus disorder prediction 411 449 - -
Gma20g00532 473 CDD RPA1_DBD_A_like 19 104 - -
Gma20g00532 473 Gene3D - 216 389 IPR012340 -
Gma20g00532 473 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00532 Gma-Chr20 12742276 12744767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00532 140 346 Core DNA Replication Machinery Family AT5G08020 24.771 8.36e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00532 - - gsj:114401925 723.391