LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g00526	ATGGGTGCTACCTCTGAGGCCATTGCCAAAATCTTTCAAGTGCCGCTCGAGAAGCCCTTGAGGAAAAATCGGCGAAGGCACTTACGGCCTCATCTTGCTCACCTGAACCAAATCCCCGCTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGACGACGACGTCTCCCCCACCCCCATCTGCAAAATCATGTTGCTGAGGGAGATTACGCACGAGAACCTTGTCAAGCTCGTCAATGTACACATCAACCACGTCGACATGTCTCTGTACCTTGCCTTCGATTATGCCAAGCACGATCTCTATTTCGTTGCTCAATGGACTAAACTATCCGCACAGGTTATGAGTGAAGGAGAGGAGCATGGAGTTGTTAAGATGGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTTTGAAGCCGTTATGTGACAATGGGCTTGATCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGTAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAACCTTGCATATGACCTCTTGTCAAAGATGCTTAAGTTGCATGGCTTACAACTTTTTCATAGGTACTTACTCATACTGGGGCCCAAAGCTGGCTATAATATATATTACATGGTGAGAATTTGCTTCATCTCTGTACTCCAAGGGCGCTTATCACAACGAAAGCGAATGCAAAGTCTCAGGGCTAGCAAGGCTGAACTAATCACCAACATGTCCCATTCACTTTCAAGTACTAATGTGCAGGAACAGGAAGGAATGCAGAACCCATTTGAATTCAGTGAAGACAAGATCCTGGATGATGTTTACAGAACCCATTTCGATTGTTTTGAGAAGTGCGATGTGACATCTCTGCAAACGGTTGCTTCAAATGTTATCAACCACTCGATCGATATCTCAGAGAAGGTCATTAGTAAGGGTGACCAACTCAGGGAACAGTTCAGTGAAGAAATTAACATAAGTTCCCAACAACTTACTGCCAAACTGAGGCGGATTGCTTACCTGATGATATGCACTCCTCGTGGTGAACACTTCGGGCATCGCACAACAATGTTGATTCTAGAACAACTGAAACATTATTCTTGGGATGCAAAAGTATTGATAGTTCAAGCAGCTTTTTCCCTAGAATATGGGAAAATCATGTACCTTCCCCTGACCACACAATGCCAGCAGCAGATTGAAAATTTATTTGCAGATTTGAATGGACTTCTAATGGTTCCTCAAAACACACAGCATCTCCCTTACTTCAACAGTGTGGTGAAGAAGGCAATGCAAATGATTGAATGCATCATTGAGTGGAAGAGGCTAATTAGTTTAGGGCATGACATAAAAGATGTGCCCACCTTGGCAGAAACTTTTCACCAGATCCCTGTTGTTGTCTACTGGGCGATCTTCACCTTTGTCAGTTGTACAGGTCAAATTGATGAGTTCACAGATTATAAGGTTCAGAGACATGAATTATCGAAAAGCTTTGAGCCTAAGCTTGACTCCATTCTAGGAAAATTTAAGGAATTTCTGGAAAGGTGTAGCAAGGAGATAGTGAGAATAGAAGACTACACCAGGCGTGAGAAAATTGTGATTCATACTGGTAAAAATATTGTAAAGGTTTTGAAAGCACTCATAATCTCCAGAGAGAACAGGGATTTAAGACAGAATGTGTTTAATGTCCTTACTGGAGAACAGGTTAAAATCGAAGAGTTTAAGAAGTATGTCTTATTATTCATTTCGGGCCTTGATAAAATTGAAGATGAGATTCGGCTTCTAAAATCAATACACGAGAAGTTGAAGGAAAAACCGAGAGAAGTAGAAGGCTATAGGAGTGAGGATTTCAAGATTTTGTGGATCCCCATTGTGGATGAATGGAATGAGGAACGTAGGAAAAAATTAGAAAGTCATTTACAGTGTAATAAGTTTGGATGGTACGTAGTCAAATATTTCAATTTCGAAACAGGCATGAAGCTTATTAAAGAGGTGTTCAAGTACAAGGAAAAGCCTATTATTGCATTAATTAATCCTCAAGGTAAGGTGGAAAACATAGACACTAAGCAAATTATATCTGTGTGGGGCATCGATGGGTTTCCTTTCAGAACCTCTGATCACTATCGACTTACTCAGCAATGGAACTGGTTTTGGTCTGAAATGACCAAACTCAACCAAGGAATAGAGAGCTTGATCGAAGAGGATTGTTATCTCTTCATCTATGGTGGCATGGACACAAAGTGGATCCAAGAATTTGCAACTGCCATAGAGACATTGAAGAGGGACGTTGCGAAACTCAAGTTGAATATAAACACCACAATAGAGTCATACCAACTAGGAAAGGATGATCCCAAAGCTATTCCACACTTTTGGATTGCCATTGATAGCTTGCTTACAAGGAGGAAACAAATGAAGAAGGGCATTGACTTTGCAACAAGTGAAGAAATAAAAAGGTTGTTGTTCCTCAAACAAGATCCTAAGGGATGGACCATTCTTAGTAAAGGGCACAATGTGAAGTTACTTGGTCATGGTGAGGCCATGTGTCGCACGGTCAAGGACTTTGGCATGTGGCATGGAAAGTTGCATGAAGAAGTGAGTTTTGATGTGGCTTTCAGAGAATACTATGAGGAAATAATGAAGGATAATAAAGACTGTTCCAAAAAATGTTTAAATGTAATTTCTGCTGGTTATGCCATGGATATATTGGAACGAATAGTGTGCCCTAAAAAGGATTGTCGGCGTCCGATGGAGGACTTGTACAGGGGCGGAAGTAGGTATATGCCAGCAGGGCAGTCACCCCCTCCCCAAAGATCACATACCTCAATATTTCCAGAGGAGAAAGAGAAGCACGTTGGACGAATCATTAACGGCAACGACGTTCCCAGACTCGGAGAGAAACGTGTGGTGGTGGTGTGTGAAAGCCATGTCGGCTCGATCGTAGGGGTACGTAGGCCTTTTGGGCCTGGTGGATACGGCACCATTTTTTTGCAGATTCGGGGCACCATGCAAAGCAACAATAGTGTCAATGGGATTGTGAACCAGAGGGTTTCGCGGAACAGTTTCAGTGTGGTTTTCAGTTCCAAGAGTAAATTCATAGTGGATAGTCTCCACCGCCGAAGCCCAGATGTGACAGTACATGATTTATTACAAGATTTCAAACGAATAAATTATCATAAAGCCTACCTTGCAGCTCTGCTTAGATCCATAAATTTTTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGTGCGGATGTTGGGCAGAGTAATCTCATGGCTCTCTATGATACTAGGTTCAGCCAGGTTGGCACAAAACTAATTAAGTTGCTTATTCATTTTATGATCACAACTTTCAGGGATTTTGGCTTTAGAAAATAA	3474	0.4188	MGATSEAIAKIFQVPLEKPLRKNRRRHLRPHLAHLNQIPAGTPSKSIAIKKFKQSKDDDDVSPTPICKIMLLREITHENLVKLVNVHINHVDMSLYLAFDYAKHDLYFVAQWTKLSAQVMSEGEEHGVVKMADFGLARIYQAPLKPLCDNGLDQLDKIFKVLGHPTLEKWPSLVSLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKNLAYDLLSKMLKLHGLQLFHRYLLILGPKAGYNIYYMVRICFISVLQGRLSQRKRMQSLRASKAELITNMSHSLSSTNVQEQEGMQNPFEFSEDKILDDVYRTHFDCFEKCDVTSLQTVASNVINHSIDISEKVISKGDQLREQFSEEINISSQQLTAKLRRIAYLMICTPRGEHFGHRTTMLILEQLKHYSWDAKVLIVQAAFSLEYGKIMYLPLTTQCQQQIENLFADLNGLLMVPQNTQHLPYFNSVVKKAMQMIECIIEWKRLISLGHDIKDVPTLAETFHQIPVVVYWAIFTFVSCTGQIDEFTDYKVQRHELSKSFEPKLDSILGKFKEFLERCSKEIVRIEDYTRREKIVIHTGKNIVKVLKALIISRENRDLRQNVFNVLTGEQVKIEEFKKYVLLFISGLDKIEDEIRLLKSIHEKLKEKPREVEGYRSEDFKILWIPIVDEWNEERRKKLESHLQCNKFGWYVVKYFNFETGMKLIKEVFKYKEKPIIALINPQGKVENIDTKQIISVWGIDGFPFRTSDHYRLTQQWNWFWSEMTKLNQGIESLIEEDCYLFIYGGMDTKWIQEFATAIETLKRDVAKLKLNINTTIESYQLGKDDPKAIPHFWIAIDSLLTRRKQMKKGIDFATSEEIKRLLFLKQDPKGWTILSKGHNVKLLGHGEAMCRTVKDFGMWHGKLHEEVSFDVAFREYYEEIMKDNKDCSKKCLNVISAGYAMDILERIVCPKKDCRRPMEDLYRGGSRYMPAGQSPPPQRSHTSIFPEEKEKHVGRIINGNDVPRLGEKRVVVVCESHVGSIVGVRRPFGPGGYGTIFLQIRGTMQSNNSVNGIVNQRVSRNSFSVVFSSKSKFIVDSLHRRSPDVTVHDLLQDFKRINYHKAYLAALLRSINFSDLQKPQGELDGKACADVGQSNLMALYDTRFSQVGTKLIKLLIHFMITTFRDFGFRK	1157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma20g00526	1157	Coils	Coil	614	634	-	-
	Gma20g00526	1157	Gene3D	Phosphorylase Kinase; domain 1	40	116	-	-
	Gma20g00526	1157	Pfam	Sieve element occlusion N-terminus	297	561	IPR027942	-
	Gma20g00526	1157	Coils	Coil	778	805	-	-
	Gma20g00526	1157	PANTHER	SIEVE ELEMENT OCCLUSION-RELATED	280	947	-	-
	Gma20g00526	1157	Pfam	Sieve element occlusion C-terminus	754	948	IPR027944	-
	Gma20g00526	1157	SUPERFAMILY	Protein kinase-like (PK-like)	45	218	IPR011009	-
	Gma20g00526	1157	PANTHER	PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE	280	947	IPR039299	GO:0010088

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g00526	Gma-Chr20	12348168	12371214	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma20g00526	43	240	Core Cell Cycle Gene Families	AT5G63610	45.302	4.41e-63	221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g00526	-		-	gmx:100818235	1368.6