Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00520 ATGAGTCCAATGGATAACATGGGTGTAGAGAGGGGATATGATTATTGTCCAGCCAAAAAGGGTCCCTCAGTGATGAAAACCAAAAAACCTTGTTCCAAGGGCAACAAGAAGGACTGCCACATCAAGGTGAACGGGAGAGACCGTCGAGTTCGTGTATCAACAATATGTGCCGCTCGTATCTTCCAACTCACTTGTGAGCTAGGCAACAAGACAAATGGTGAGACCATTGAGTGGCTCTTACGCCAGGCCGAGCCATCAATTATTGCCGCCACTGGCACGGGCATTATGCCTTCCAACACCACAGTGGCCAACAACACCTCCTCGATTATATCGGCCACTTGTGCCAACTTTTTGCCTTCTAACAACACCACCTTGGTGCCACCAAACACAATTGTTACTCAAGATTCCAATTTGGTCACCAATGTTGCGAGTGCAAGGATAGAGCAACAAATCCCACCTTTCGATTTCGACTTTGATTGGTTGCAACACTCTGATTTAGGGTTTTAA 507 0.4675 MSPMDNMGVERGYDYCPAKKGPSVMKTKKPCSKGNKKDCHIKVNGRDRRVRVSTICAARIFQLTCELGNKTNGETIEWLLRQAEPSIIAATGTGIMPSNTTVANNTSSIISATCANFLPSNNTTLVPPNTIVTQDSNLVTNVASARIEQQIPPFDFDFDWLQHSDLGF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00520 168 Pfam TCP family transcription factor 36 110 IPR017887 -
Gma20g00520 168 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
Gma20g00520 168 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 20 162 - -
Gma20g00520 168 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 162 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00520 Gma-Chr20 12200091 12200597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00520 22 126 TCP Transcription Factor Family AT5G23280 55.238 9.40e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma20g00520 TCP 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00520 - K16221 pvu:PHAVU_005G132500g 201.83