Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00500 ATGGCTAGGAAGAAGGTGGACCTTTCATACATAACCAACGCCCGGAAGAGGAAGGCTACATTAAGCAAAAGGAAGAATGGTTTGATCAAGAAGATGGATGAAATCAGCACTCTTTGTGGGATTGAAGCATGTGCTATATTTTATACTCCCAATAATCCCCAGCCAGAGGTTTGGCCATCTGATTCGGGAGCCCAAAGTGTGCTTTCTAGGTTTAGGAAAGTGTCTGAACTAGAACAAAGCAAAAAAAAGTTGAGTCAAGAGAGTTTTTTGAGGCAGAGGATTAACAAAGCCCAAGTACAACTTGGGAAACTAAGGAATGAAAATAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAAAACCTTAATGCTAAGAACAATTTTGAAAATTCAAATATGATTGATTTGAATGATGTCTCAAACTTGATTAATCATAACTTGGAGGAAGTAAAAAGGAAAATCAATATGAGCCAAGCCCAAGAG 480 0.3854 MARKKVDLSYITNARKRKATLSKRKNGLIKKMDEISTLCGIEACAIFYTPNNPQPEVWPSDSGAQSVLSRFRKVSELEQSKKKLSQESFLRQRINKAQVQLGKLRNENRKKEVTLLMFQNLNAKNNFENSNMIDLNDVSNLINHNLEEVKRKINMSQAQE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00500 160 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma20g00500 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 PANTHER MADS BOX PROTEIN 2 156 - -
Gma20g00500 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gma20g00500 160 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Gma20g00500 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma20g00500 160 Coils Coil 87 114 - -
Gma20g00500 160 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00500 Gma-Chr20 10859887 10860513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00500 1 155 Type I MADS-box Gene Family AT5G48670 50.323 1.18e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma20g00500 SRF-TF 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00500 - - gmx:102664096 314.694