Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00491 TCGGGTCGAGGAGGAGGAAGGGATCGGTTTAGGAGGGATTATCCTTCAAGGCATGAGGATAATAGGGGGAATGGGATTAGTGGACGTGACAACCGCAACAGCAACAGCAACAACCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCCCACAATATTGTAGAGGAAGAACTTGCTCACCATTTCTTGAGGTACGGACCACTGGAGAATGTGGCATTCCAGCCCGGCCGCAGCTATGCTTTCATAAATTTCAGAATGGATGAGGATGCTATTGATGCCTTGAGAGCACTGCAAGGCTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCGGCAATGCAACGTGATGAAGATTGCTCATGGGATGAACGGAACTCAGCATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCTGAATTGCATTATTCTGATAAATCCAAGCTGAGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGACGAATCTATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCCTGCAGAGCAAGAGACGATCTGAAGGGGAAGTTATTTGGGAATCCCCGGGTGCATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCTCGTTCCCCAATTTACAAGTCAAGTGGGCGTGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCGCAACATTGGTTCTCCAAACCATTTCGGGATTTGGGATTCTGATCCTTATGATCAAAGGGGTTCTTCATGGACTGGCGGAACTAACACATTTGAACAAAGGAAAGTCGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATCATGTGGGTAATGTTCCACAGAGATTTTCTCAAAAGGGTGAATTCTTTGAAGATCCGCGGGCCTTGCCAGATTTTTCCTATCTACATGAGGCTAAAAGGATGAAGGCTGGTTCTCCACCTCTTGAAAGAGAGATTCCAGAGTATCCTTTCACTGAGTATGAAAGGCAGAGACGTGTTTTCCCGAGATTATCGGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGACCAGACTCTTGATCATCCACCAAATTCACCTTTGCCTCGTTTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTCCAAATGGGTCCTAGCGCTCTGCAGTCAACATATGTTGAGAAGAAAGGATTCACGCCTGAACAAGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATGATGTT 1541 0.4523 SGRGGGRDRFRRDYPSRHEDNRGNGISGRDNRNSNSNNPPSRHLWVGNLSHNIVEEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKADKPSAMQRDEDCSWDERNSALRGSPFSQREFRGHHGSPELHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDDLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKSSGRDGSSENLRQDRSFNADRNIGSPNHFGIWDSDPYDQRGSSWTGGTNTFEQRKVGEKGRTLGVSQEIYEHMNSPSRERHHVGNVPQRFSQKGEFFEDPRALPDFSYLHEAKRMKAGSPPLEREIPEYPFTEYERQRRVFPRLSDLPPHEPFDKGFDAGNFTYDQTLDHPPNSPLPRLDRHEGWKPYDSFQMGPSALQSTYVEKKGFTPEQDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDMM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00491 513 MobiDBLite consensus disorder prediction 282 301 - -
Gma20g00491 513 MobiDBLite consensus disorder prediction 139 164 - -
Gma20g00491 513 MobiDBLite consensus disorder prediction 142 164 - -
Gma20g00491 513 PANTHER RNA-BINDING PROTEIN SPENITO 16 513 - -
Gma20g00491 513 SUPERFAMILY RNA-binding domain, RBD 182 272 IPR035979 GO:0003676
Gma20g00491 513 MobiDBLite consensus disorder prediction 1 43 - -
Gma20g00491 513 MobiDBLite consensus disorder prediction 247 271 - -
Gma20g00491 513 Gene3D - 23 121 IPR012677 -
Gma20g00491 513 MobiDBLite consensus disorder prediction 27 43 - -
Gma20g00491 513 SMART rrm1_1 43 110 IPR000504 GO:0003723
Gma20g00491 513 SMART rrm1_1 172 240 IPR000504 GO:0003723
Gma20g00491 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 114 IPR000504 GO:0003723
Gma20g00491 513 SUPERFAMILY RNA-binding domain, RBD 30 122 IPR035979 GO:0003676
Gma20g00491 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 107 IPR000504 GO:0003723
Gma20g00491 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 236 IPR000504 GO:0003723
Gma20g00491 513 Gene3D - 157 255 IPR012677 -
Gma20g00491 513 MobiDBLite consensus disorder prediction 1 26 - -
Gma20g00491 513 CDD RRM3_Spen 44 113 - -
Gma20g00491 513 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 513 - -
Gma20g00491 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 244 IPR000504 GO:0003723
Gma20g00491 513 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00491 Gma-Chr20 10259362 10269203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00491 32 262 Eukaryotic Initiation Factors Gene Family AT1G22760 24.896 6.97e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00491 - - gmx:100811668 1039.25