LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g00486	ATGGTTGAACAACAAATCATCAGTGTTGTTGGTTCTTCCTCTAGCTCTTCTCTTATGGtgtcttctaaaaaatatgatgtttttctaagctttcgaggtgaggacacacgcatgaatttcacaagtcatcttcatgaagctttgaagcaaaagaaagtcgaaacctacatagattaccaacttgaaaagggagatgaaatctcaccagcactaatcaaagcaattgaagattctcatgtatctattgtcatcctctcagagaactatgcttcctcaaaatggtgcttggaagaactcagcaagattctagaatgcaagaaaaagcaaggacaaattgtgataccagtgtttcacaacatagatccttcccatgtgagaaagcagaatggaagctatgagaaagcgtttgcaaaacatgaaggagaagccaagtgcaacaaatggaaagctactcttaccgaagtagccaatttagctgggtgggactctagaaatAGGACTGAATCTGAACTTCTTAAGGACATTGTTGGAGATGTATTAAGAAAATTGACTCCTAGATATCCAAACCAACTTAAAGGACTGGTTGGAATTGAGGACAATTATGAAAAAGtagaatcattactaaagattgggtcaagtgaagttataacccttggaatatggggcatgggtggcataggaaagactactcttgctagtgctttctatgccaaactgtctcatgagtttgaggctgattgcttccttgtaaatgtaagggaaAATGCAAAAAGGCATGGATTAGAAGCTCTAAGTCAGAAACTTTTTTCTGAGTTGTTAGAGAATGAAAATCATTGTTTTGATGCACCCTTTTTAGTGTCCCAATTTGTCATgcgtaggcttggatgtaaaaaagttctcattgttttggatgatgttgctacctcagagcagttagaatatctaattaaagattatgatttgttaggacaaggaagtagagtcattgttacaactagaaataagcaaatatttagacaagttgatgaagtatatgaggtcaaggaattgagttttcataactctcttcagcttttctgtttgactgtttttgaagaaaaacaacctacacatggatatgaagatctatcaagtcgtgcaatttcatattgcaaagggattcctttggctttaaaagttttgggtgcaggttttcgtcggagaagtaaagaaacatgggaaagtgaattgagaaaactccaaaagatcccaaatacggaagttcatgatgtattaaaattaagttatgatgccttagatgattctcaacaggacatctttttggacattgcatgcttcttcaatggagaagacaaagaatgggtaacaagtcttatggaagcttgtgaattctttgcagtatcagatatagaagtccttttggataaagctttcataacaatatccaatttcaataagatagaaatgcatggcttgatacaacaaatgggtagagaaattgttcgtcatcaatccatcaaaagccctggaaaacgaagtcggttatggaaacctgaggaagttcaagaagtattgaaatataaaagaGGAACCGATGTTGTTGAAGGCATAAGTTTAGATTTGTGTAAATTAACCGGGGATCTAAATTTGAGCTCTAATTCCTTCGCAGAGATGATTAACTTGAGATTTCTTATAATTCATGATTCGTGCCGGACAAATCGATTTCATGTGTACTTTCCAAATGGTCTCGAATCATTATCTTCTAAATTGAGGTACCTTCGTTGGGATGAATTCCATGTTGAGTCTTTGCCATCTAGCTTTTGTGCTGAACAACTTGTAGAGCTTCGCATGCTTCGTAGCAAGGTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTTTGAATTTGAAGACAATTGACCTTGATGACTCCCGAGACTTGATTGAGATCCCGGACTTATCAATGGCAGAAAATCTTGAAAAAGAGCTTCCACCATCCCTGAGCGAGCTTTATTTAAATGATTGTTGTAAACTCGTGTCTCTGCCGGAGCTTCCACCATCGGTTAAAGAGGAGACCATGTCACCGACTTGTGGTCCAGTGTCAGATCATCAGTTTTCTTGTTCTATCCATCGAGATGACATATTGATAGGTGAAGTGTATGATCCTTTCAGTAACATGACATTTATATTTGCTGACATTAATGGTAATAAAGACACCATAAAAGGATGTGGGGTCTTTCCAGTATATGGGACAGAATCCGGGTTTAAGCTGGTGAGTAGTAGCAGCAACGAAATTTTTGACAATGAGTCAGAACCAAGAGCAAAAGAAGTTGGAGTTGAAAGCTGCAATAATGAAAATGAAGAAAACTGTGAACAACTTTTCAGAACCAAGAGGAGGAGAACTGCATGTGATAATCTTCCTGCCATTACTTCATCGAAAATCATGCATAACATTGTGCTGTAA	2460	0.1809	MVEQQIISVVGSSSSSSLMVSSKKYDVFLSFRGEDTRMNFTSHLHEALKQKKVETYIDYQLEKGDEISPALIKAIEDSHVSIVILSENYASSKWCLEELSKILECKKKQGQIVIPVFHNIDPSHVRKQNGSYEKAFAKHEGEAKCNKWKATLTEVANLAGWDSRNRTESELLKDIVGDVLRKLTPRYPNQLKGLVGIEDNYEKVESLLKIGSSEVITLGIWGMGGIGKTTLASAFYAKLSHEFEADCFLVNVRENAKRHGLEALSQKLFSELLENENHCFDAPFLVSQFVMRRLGCKKVLIVLDDVATSEQLEYLIKDYDLLGQGSRVIVTTRNKQIFRQVDEVYEVKELSFHNSLQLFCLTVFEEKQPTHGYEDLSSRAISYCKGIPLALKVLGAGFRRRSKETWESELRKLQKIPNTEVHDVLKLSYDALDDSQQDIFLDIACFFNGEDKEWVTSLMEACEFFAVSDIEVLLDKAFITISNFNKIEMHGLIQQMGREIVRHQSIKSPGKRSRLWKPEEVQEVLKYKRGTDVVEGISLDLCKLTGDLNLSSNSFAEMINLRFLIIHDSCRTNRFHVYFPNGLESLSSKLRYLRWDEFHVESLPSSFCAEQLVELRMLRSKVKKLWDGVQNLLNLKTIDLDDSRDLIEIPDLSMAENLEKELPPSLSELYLNDCCKLVSLPELPPSVKEETMSPTCGPVSDHQFSCSIHRDDILIGEVYDPFSNMTFIFADINGNKDTIKGCGVFPVYGTESGFKLVSSSSNEIFDNESEPRAKEVGVESCNNENEENCEQLFRTKRRRTACDNLPAITSSKIMHNIVL	819

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma20g00486	819	Pfam	Leucine Rich Repeat	611	630	IPR011713	-
	Gma20g00486	819	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	443	IPR027417	-
	Gma20g00486	819	SUPERFAMILY	L domain-like	538	691	-	-
	Gma20g00486	819	PRINTS	Disease resistance protein signature	293	307	-	-
	Gma20g00486	819	PRINTS	Disease resistance protein signature	630	646	-	-
	Gma20g00486	819	PRINTS	Disease resistance protein signature	384	398	-	-
	Gma20g00486	819	PRINTS	Disease resistance protein signature	217	232	-	-
	Gma20g00486	819	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	161	IPR035897	-
	Gma20g00486	819	Pfam	NB-ARC domain	200	429	IPR002182	GO:0043531
	Gma20g00486	819	SUPERFAMILY	"Winged helix" DNA-binding domain	420	526	IPR036390	-
	Gma20g00486	819	ProSiteProfiles	TIR domain profile.	23	183	IPR000157	GO:0007165
	Gma20g00486	819	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	687	-	-
	Gma20g00486	819	Gene3D	-	21	183	IPR035897	-
	Gma20g00486	819	Gene3D	Ribonuclease Inhibitor	534	702	IPR032675	-
	Gma20g00486	819	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	687	IPR044974	GO:0006952
	Gma20g00486	819	Pfam	TIR domain	24	195	IPR000157	GO:0007165
	Gma20g00486	819	SMART	till_3	24	158	IPR000157	GO:0007165
	Gma20g00486	819	Gene3D	-	350	433	IPR042197	-
	Gma20g00486	819	Gene3D	-	184	348	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g00486	Gma-Chr20	9724302	9729109	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma20g00486	21	695	WRKY Transcription Factor Family	AT4G12020	33.379	4.50e-102	345

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g00486	-		-	gmx:100813283	1278.85