Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00480 ATGGGAAACGCTTGTGCAAAAGGAAAACCAGTTGCTCATGTCTCTTCCTCCAATTTTTCTGGAGGTAAGAAGCATGCAAGTAGGCCAAAGCAGTATTCAAATTCTTCTGAACAACTATCTGCTCCAATAACTTCAGAATTAAATGTTCCCAAATCCTTCTCCAGTAACCTAAAATCCTTCAGCTTGAATGATCTTAAAGAGGCCACTAAGAACTTCCGGCAAGAAAATTTAATTGGAGAGGGAGGATTCGGGCGCGTCTTCAAAGGATGGATCGATGAGAACACATATGGTCCCACCAAACCAGGCACTGGAATTGTAGTGGCCATTAAAAACCTAAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTCAAGAAGTGAATTATCTTGGACAGCTTCAGCATGAAAATTTGGTGAAACTTATTGGCTATTGCTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTATTCAGGAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCAAGAGGATTAACACTCTTACATTCCCTGGATCAAAATGTTATCTTTCGTGATTTAAAGGCTTCCAACATCCTACTTGATTCGGACTTCAATGCAAAGCTTTCAGATTTCGGCTTGGCAAGAGACGGTCCCACTGGAGATAATACTCACGTTTCAACTAGAGTTTTAGGAACTCAAGGGTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTATGGTGTAGTCTTGTTAGAGTTACTAACTGGAAGGCGCGCGGTGGAAGACGATAGACCTGGATTTTCAGAGGAAACCCTGGTGGATTGGGCAAAGCCATTCTTGAGTGATAACAGAAGAGTTTTGAGAATAATGGATACAAAGTTGGGGGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAGTGCCTCAACATAGACCCAAAATTTAGACCACCTATGGTGGAAGTTCTAGCAGCATTGGAAGCACTTAATTCCTCAAATTCATTTACAAGGACACCAAAACATGAGAGTCATGCAACCAAACAATCTGGTGGCCCTTCACAAAAGTAA 1149 0.4238 MGNACAKGKPVAHVSSSNFSGGKKHASRPKQYSNSSEQLSAPITSELNVPKSFSSNLKSFSLNDLKEATKNFRQENLIGEGGFGRVFKGWIDENTYGPTKPGTGIVVAIKNLKPESFQGHKEWLQEVNYLGQLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLTLLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVLGTQGYAAPEYVATGHLTPRSDVYSYGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDNRRVLRIMDTKLGGQYSKKGAQAAAALALQCLNIDPKFRPPMVEVLAALEALNSSNSFTRTPKHESHATKQSGGPSQK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00480 382 PANTHER OS01G0588500 PROTEIN-RELATED 17 380 - -
Gma20g00480 382 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00480 382 CDD STKc_IRAK 78 356 - -
Gma20g00480 382 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 380 - -
Gma20g00480 382 MobiDBLite consensus disorder prediction 361 382 - -
Gma20g00480 382 MobiDBLite consensus disorder prediction 1 41 - -
Gma20g00480 382 Pfam Protein tyrosine and serine/threonine kinase 75 351 IPR001245 GO:0004672|GO:0006468
Gma20g00480 382 SUPERFAMILY Protein kinase-like (PK-like) 46 360 IPR011009 -
Gma20g00480 382 MobiDBLite consensus disorder prediction 13 41 - -
Gma20g00480 382 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Gma20g00480 382 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Gma20g00480 382 Gene3D Transferase(Phosphotransferase) domain 1 158 377 - -
Gma20g00480 382 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00480 Gma-Chr20 9391883 9396352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00480 51 359 Glycoside Hydrolase AT3G07070 50.318 1.57e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma20g00480 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00480 - - gmx:100785631 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00480 20 9391883 9396352 Gma08g02800 08 44047189 44050395 GST
Gma20g00480 20 9391883 9396352 Gma14g00342 14 3065283 3069242 PCT
Gma14g00342 14 3065283 3069242 Gma20g00480 20 9391883 9396352 PCT