Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00477 ATGGCTATGGCAGCCCCCGGGCAACTCAACGTGAACGAGTCACCTTCGTGGGGTTCCAGAAGCGTCGATTGCTTTGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGGTCAGTTTATATGGCTAGAGAGATTAAAACTGGAGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTGAAGAAATTGCACCATGAAAATGTAATCAACTTGAAAGAAATTGTGACTTCTCCAGCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTCTGACTGGGCTACATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCGAATCTTCTCATAGACAATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGACCCCCTGAGCTGCTGCTTGGGACAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTAGGGTGCATTTTTGCAGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCCGGTGTTTCTAAGACTCCTTGGTATAATCAATTTAAGCCTACAAGACCAATGAAAAGACGTCTCCGGGAAGTTTTCAGACATTTTGATCGTCATGCCCTGGAATTGTTGGAGAAGATGCTGACTCTTGATCTCGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACGGATCCATTACCATGTGATCCTAAGAGTTTACCCAAATACGAGTCATCGCATGAGTTTCAGACCAAGAAAAAACGTCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCTCAGCAGCATACACGTTTGCCCCCCATTCAGCAGGCTGGGCAACAACACCCCCAAATGCGGCAAGGTCCTAACCACCCTATTCATGGGTCTCAACCAGCAGTTGCTGCAGGACCTAGCCATCATTATGGAAAGCCTCGAGGTCCTTCTGGTGGGCCAGGAAGATATCCTTCTGGTGGGAACTCTGGTGGGGGATACAATCACCCGAATCGTGCAGGTCAAGGAGGAGGAAGTGGTTATGGAAGTGGGCCATATCCTCCTCAAGGGCGGGGTGCACCTTATGGGTCAAGTGGTATGCCCGGTGGGCCCAGTGGTGGTCCTCGTGGTGGGGGTGGAAGCGGCTATGGAGTTGGAGCTCCAAATTATCCTCAAGGTGCTCCTTATGGTGGATCGGCAGCTGGGCGTGGATCAAACATGATGGGTGGTAACCGCAACCAACAGTatggttggcagcagtaa 1536 0.4635 MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVINLKEIVTSPADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDLAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQAGQQHPQMRQGPNHPIHGSQPAVAAGPSHHYGKPRGPSGGPGRYPSGGNSGGGYNHPNRAGQGGGSGYGSGPYPPQGRGAPYGSSGMPGGPSGGPRGGGGSGYGVGAPNYPQGAPYGGSAAGRGSNMMGGNRNQQYGWQQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00477 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Gma20g00477 511 MobiDBLite consensus disorder prediction 326 511 - -
Gma20g00477 511 SUPERFAMILY Protein kinase-like (PK-like) 19 323 IPR011009 -
Gma20g00477 511 Pfam Protein kinase domain 25 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00477 511 MobiDBLite consensus disorder prediction 497 511 - -
Gma20g00477 511 PANTHER CELL DIVISION PROTEIN KINASE 5 445 - -
Gma20g00477 511 ProSiteProfiles Protein kinase domain profile. 25 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00477 511 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 445 - -
Gma20g00477 511 MobiDBLite consensus disorder prediction 363 385 - -
Gma20g00477 511 Gene3D Phosphorylase Kinase; domain 1 12 112 - -
Gma20g00477 511 Gene3D Transferase(Phosphotransferase) domain 1 113 355 - -
Gma20g00477 511 MobiDBLite consensus disorder prediction 328 357 - -
Gma20g00477 511 SMART serkin_6 25 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00477 511 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Gma20g00477 511 CDD STKc_CDK9_like 25 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00477 Gma-Chr20 9332238 9345367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00477 1 511 Core Cell Cycle Gene Families AT5G10270 75.810 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma20g00477 Pkinase 8.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00477 K08819 - gmx:100793565 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00477 20 9332238 9345367 Gma14g00341 14 3058589 3064713 PCT
Gma20g00477 20 9332238 9345367 Gma02g02585 02 51861682 51867338 PCT
Gma14g00341 14 3058589 3064713 Gma20g00477 20 9332238 9345367 PCT
Gma02g02585 02 51861682 51867338 Gma20g00477 20 9332238 9345367 PCT