Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00474 ATGAGTAGTGTGACTAGTGGGGGTGATAATCGAAAAATATCCAAAGGTCGTCGGTCATCATCATTAGAGGAAGAAGCTGGAGTTGGAGGTAACATAAGAGGAGAAAGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGCCAAAAAACACGGACAAGGCAATTGGAATGCAGTACATAAATATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTGAATTTACTGCAGAAGAAGAGAATCGAATCCTTGAACTACATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATTGCAATCAAGAAAGTCAAAATATTAGCATCCTGTCAAATGAAGCCTCCCAGCATGGTGATCTGTCACAAACAGACTTTGATATACCAGACGTGGAATTCAAAATTTTCAAATTTCGTCATGGTCTATCACATGGACAGTCAATATTTGATATGCCTGAAAGTAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTATAACTTGTTCCCAACTATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATATGATAGTTTTGAAAGTTGTACAATTAATGCTGCCCCACTATTTGATCAGTATGACAATTATACTTCTGAAAAAATTTCTGACCATCCTAGGTTGTCTCTTCCACGTGATCCCGTTCTTAACACCAATGATCAGTTTAATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATGTTTAGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACGTCCCCGCTTCCTTCACTCGAGTCTGTTGATACATTGATTCAGTCTCCTGTTGTTGAGCCTATTCTATTAGATCCCATTTCTCCGCAGAGCAGTGGTTTGCTGGAAGCGATAGTCCACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTACAAGAAACAATTGGTACAACCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATTCCTTTCAGACAAAATGGTATGAACTAGGGGAGCCAAATTCCCCCTTTGGTCAATCTGCTGCTTCAGTTCTAATTGAGTATACTCCTGTAAGCATGTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCACCCAATTTCCAGACAGTTCCAGGAAGAAAAAAAATATATTGAAACAGATGGATTATACACAGCCAGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACCGAGTATGGAAGTGATCAATCTGTTCTGCAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGCGCTAG 1566 0.4208 MSSVTSGGDNRKISKGRRSSSLEEEAGVGGNIRGESPLKKGPWTAAEDAILVEYAKKHGQGNWNAVHKYSGLARCGKSCRLRWANHLRPDLKKGEFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNCNQESQNISILSNEASQHGDLSQTDFDIPDVEFKIFKFRHGLSHGQSIFDMPESSLFDQSSDSSHSYNLFPTMRPTKRPRESEMLYDSFESCTINAAPLFDQYDNYTSEKISDHPRLSLPRDPVLNTNDQFNGDNLTGSHAALNGNASSSVPMFRAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPVVEPILLDPISPQSSGLLEAIVHNSKSLKGSNNDLLLQETIGTTNEVAKSSTLNHSFQTKWYELGEPNSPFGQSAASVLIEYTPVSMCSVDGPQSIETTQDHDDKHEALTTQFPDSSRKKKNILKQMDYTQPDALLDLGWFGNSTEYGSDQSVLQDALSALLGEDCQR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00474 521 MobiDBLite consensus disorder prediction 1 40 - -
Gma20g00474 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Gma20g00474 521 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 519 - -
Gma20g00474 521 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Gma20g00474 521 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Gma20g00474 521 SMART sant 92 140 IPR001005 -
Gma20g00474 521 SMART sant 39 89 IPR001005 -
Gma20g00474 521 Gene3D - 39 92 - -
Gma20g00474 521 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Gma20g00474 521 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Gma20g00474 521 Gene3D - 95 171 - -
Gma20g00474 521 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Gma20g00474 521 CDD SANT 42 87 IPR001005 -
Gma20g00474 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Gma20g00474 521 CDD SANT 95 136 IPR001005 -
Gma20g00474 521 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00474 Gma-Chr20 9201024 9205351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00474 38 518 MYB Transcription Factor Family AT5G06100 37.782 1.39e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00474 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00474 K09422 - gmx:100818609 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00474 20 9201024 9205351 Gma14g00337 14 3024963 3030851 PCT
Gma14g00337 14 3024963 3030851 Gma20g00474 20 9201024 9205351 PCT