Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00472 ATGGATCAAAAAGATAAGCATGCGGTTTCAGATCATCATGGGTGGGTTAAATCTTGCAAGAAAGAGAAGATGAAGCAGCAACGATCGCTTCTTCTGGGTTCTTGCCAAGCTGAGTTAGAATCACCATCTGCAGCGAAAAGCCCTTCACGAACGGTACGTGAGTGCAATATTTGCGGCAAGGTTTTCAGCAGCGGTAAGGCTTTGGGGGGTCACAGAAGATCGCACTTTCAGAAGCACCAGAAGAAGGTAAAAGTCCGTTTCACTAATCACTCATCAAAAGAAGCTGGTGATACCAGCAACAATATTAATAGGGCTAGCAATTGTGATTATGATGCTGATGATGACGGAAAACGCGTTTGTTGCATTTGCAAGAAGGAATTCCCCACAAAGAATGCTTTGTTTGGTCACATGCGATCTCACCCTGAGAGGTCATGGAGGGGTGTGTCTCCTCCCACTCATTTTCCCAATAAGAACtcttcgtcttcttcttctctctcttcttctttctctttttcttcCCATAATTCTGATTCTATGGAGAAAAACATGGAAGAGGATCGTGATGATTATGATGAATGTGTTGGTGTTGGAGCTGTTTGTGATGGTGGGGGTAATAGGGCTATTGATCTTTCAACTTTTACTTGCCCCAGTTGGCTTAAGACTGATGTGAGAGGAAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTTGCTTACTTAAGTGTTTACTCTAAGTACTTTTGTGGTGAGTCTAATGGGGTTTCTCCGAAGAAAGATGAAGTGCGGCCGAAGAGTGCTCCACCTCTAATCAAGCTTGGCAAAAGGAAGATTAATTTTAGTGGATCGTCTTCAAGTAAGAAGCATGAGGTGAAAAAGATAAAATTTTATCTGAAGGGTGAATTGAAAATCGGAAAGAGAAATGACGCGGATGGTGAAGATGATGATGATGAGGATGAGAAGTTGAATAGGTGCAAGGGTTTATCTGAATCTGAGGTGGAAGATGAGGAGGGTTTCGACAATGTGATCACTGAGGTGGTTGCTCCCGATAGGATGCAAGATGACGTTGATGAAAGGAAGGGGAAGAGGGTGGTGGATCATAAAGGGAAGAACATTAAGAAACTGGTGCTGAAATCTATGGCAAAAGAGAAAGAGAATGAGAAAGTTGGTGGCTACAAATGTGGTGCTTGTGGGAAGATTTTCTCAACTTTTCAAGGCTTAGGAGGACACAGATCAGTCCACAAGGGGAAGAACAACAACACTGTAATAATCATGGACGAGTCCAACCACAACCACTCCGAAGCTCTTGGTGATCAAGAAAACAACTCTTCCAGCTCTAGTAACATGCACAAGGTGGATGAAGCACCGTTGCCAACCGACGAGACAAGAGTGAATGAAGAAATACCAGAAACACCACCATTGCTGGCAGACGAGGCATGTCAATCTTCTTCAGGTGTTAAGAAATTGGACTTTGATCTGAATGAATTGCCTTGTGCTATGGAGGATTGA 1509 0.4235 MDQKDKHAVSDHHGWVKSCKKEKMKQQRSLLLGSCQAELESPSAAKSPSRTVRECNICGKVFSSGKALGGHRRSHFQKHQKKVKVRFTNHSSKEAGDTSNNINRASNCDYDADDDGKRVCCICKKEFPTKNALFGHMRSHPERSWRGVSPPTHFPNKNSSSSSSLSSSFSFSSHNSDSMEKNMEEDRDDYDECVGVGAVCDGGGNRAIDLSTFTCPSWLKTDVRGRKCIGAYEAAETLAYLSVYSKYFCGESNGVSPKKDEVRPKSAPPLIKLGKRKINFSGSSSSKKHEVKKIKFYLKGELKIGKRNDADGEDDDDEDEKLNRCKGLSESEVEDEEGFDNVITEVVAPDRMQDDVDERKGKRVVDHKGKNIKKLVLKSMAKEKENEKVGGYKCGACGKIFSTFQGLGGHRSVHKGKNNNTVIIMDESNHNHSEALGDQENNSSSSSNMHKVDEAPLPTDETRVNEEIPETPPLLADEACQSSSGVKKLDFDLNELPCAMED 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00472 502 ProSitePatterns Zinc finger C2H2 type domain signature. 394 414 IPR013087 -
Gma20g00472 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Gma20g00472 502 SMART c2h2final6 53 75 IPR013087 -
Gma20g00472 502 SMART c2h2final6 392 414 IPR013087 -
Gma20g00472 502 SMART c2h2final6 118 140 IPR013087 -
Gma20g00472 502 MobiDBLite consensus disorder prediction 432 474 - -
Gma20g00472 502 Pfam C2H2-type zinc finger 392 415 - -
Gma20g00472 502 Pfam C2H2-type zinc finger 119 142 - -
Gma20g00472 502 Pfam C2H2-type zinc finger 52 75 - -
Gma20g00472 502 SUPERFAMILY beta-beta-alpha zinc fingers 119 414 IPR036236 -
Gma20g00472 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 392 419 IPR013087 -
Gma20g00472 502 MobiDBLite consensus disorder prediction 142 187 - -
Gma20g00472 502 MobiDBLite consensus disorder prediction 435 452 - -
Gma20g00472 502 MobiDBLite consensus disorder prediction 151 177 - -
Gma20g00472 502 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
Gma20g00472 502 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 1 502 - -
Gma20g00472 502 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gma20g00472 502 Gene3D Classic Zinc Finger 52 140 - -
Gma20g00472 502 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Gma20g00472 502 MobiDBLite consensus disorder prediction 1 22 - -
Gma20g00472 502 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 502 IPR044653 GO:0003700
Gma20g00472 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00472 Gma-Chr20 9145580 9147088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00472 55 151 C2H2 Transcription Factor Family AT2G26940 40.196 2.00e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g00472 zf-C2H2_6 0.00012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00472 - - gmx:102667832 930.243