Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00463 ATGTCAAGTGGGACAACATACTGGTGTTACACATGCAGGCAGCCAATCTGGCTTGAAGGGAGGGAAGGCTTTTGCCCCTACTGCGATGGAGGCTTTGTGCAAGAACTCAACGAGATGCGAGGAGTTGCGCGCCAACACGGCTTCTCAACGCGGATGGAAGATGTTCATCAAATGCCTGACATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAACCGAGCATTCGGGTTAGAGATGCTGTTGATAACTTTATGAGGCAGAGAATGGCCGGAAGATACACAAACTTTGATGTGAGAAGGAGGTCTGATTCTGGTTCTGGTTCTGGTTCTATTCTTATTCCTGATGAGACTTGGGGTGTCTTTAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGCACCAGGGTTCACCAATTCTAATGGGAGCTCAAGAGGGGGTCCTAGGGGTGTTGATTTTGGTGACTACTTTCTTGGTCCTAGACTAGAAGGACTCATTGAACAACACATTTCGAATGACCGGCTTGGTCCACCGCCTGCATTGCGCTCTTCGATTGATGCAATGCCAACTATCAAGATCACACATGAGCACCTTGAGTCTGATTCACACTGTCCAGTTTGTAAGGAACGATTTGAACTTGGTTCCAAGGCAAGGAAGATGCCATGTAACCACATTTACCACTCAGATTGTATTGTTCCATGGTTAGTTCTTCATAACTCGTGTCCTGTGTGTCGTGTTGAGCTGCCACCGAAAGAACATACTAGTTCTCGAGGTAGACGTATTTGGGGAGGTAGAAATGGTAATGACAGTGGTAGTGACAATGATATCTCTAGGGGAAGGGAGAATACACAGATGAACAATGGAAGGAGAAATCTGCTATCATATTTGTGGCCATTTCGGTCCTCTAGTTCAAGTACTTAG 927 0.4574 MSSGTTYWCYTCRQPIWLEGREGFCPYCDGGFVQELNEMRGVARQHGFSTRMEDVHQMPDIMDAVRAVMEQRGSEPSIRVRDAVDNFMRQRMAGRYTNFDVRRRSDSGSGSGSILIPDETWGVFSSGPYLIFHGQAPGFTNSNGSSRGGPRGVDFGDYFLGPRLEGLIEQHISNDRLGPPPALRSSIDAMPTIKITHEHLESDSHCPVCKERFELGSKARKMPCNHIYHSDCIVPWLVLHNSCPVCRVELPPKEHTSSRGRRIWGGRNGNDSGSDNDISRGRENTQMNNGRRNLLSYLWPFRSSSSST 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00463 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 253 IPR013083 -
Gma20g00463 308 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Gma20g00463 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 307 - -
Gma20g00463 308 SMART ring_2 206 246 IPR001841 -
Gma20g00463 308 MobiDBLite consensus disorder prediction 251 289 - -
Gma20g00463 308 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Gma20g00463 308 SUPERFAMILY RING/U-box 186 255 - -
Gma20g00463 308 CDD RING-H2_RNF126_like 206 247 - -
Gma20g00463 308 MobiDBLite consensus disorder prediction 269 289 - -
Gma20g00463 308 Pfam Ring finger domain 205 247 IPR001841 -
Gma20g00463 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00463 Gma-Chr20 8956505 8957431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00463 150 298 C3H Transcription Factor Family AT5G01980 33.333 9.73e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00463 K11982 - gmx:100819514 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00463 20 8956505 8957431 Gma14g00335 14 3014005 3014714 PCT
Gma20g00463 20 8956505 8957431 Gma02g02592 02 51916053 51918376 PCT
Gma14g00335 14 3014005 3014714 Gma20g00463 20 8956505 8957431 PCT
Gma02g02592 02 51916053 51918376 Gma20g00463 20 8956505 8957431 PCT