Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00442 ATGGAAAGGAAAAGTGGGAGTGTTTTGATGGAAAACGACATTCTTCTTGTTGGTGACGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGAAAATGAGCTTGGATAGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGAATAGATAACAACAATGCATGA 204 0.4118 MERKSGSVLMENDILLVGDDPWEEFVSCVQSIKILSSAEVQKMSLDRDLGHVPVPNQACSGIDNNNA 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00442 67 Pfam AUX/IAA family 11 42 IPR033389 -
Gma20g00442 67 PANTHER AUXIN RESPONSE FACTOR 10 65 - -
Gma20g00442 67 Gene3D - 8 44 - -
Gma20g00442 67 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 65 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00442 Gma-Chr20 8542478 8542772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00442 11 67 B3 DNA Binding Superfamily AT1G19220 75.439 3.97e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma20g00442 AUX_IAA 1.8e-05 CL0072