Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00436 ATGGAACGACAACGCTACTCCTGTAGTGTGTCAAGGTTGAATGATCAACACACCACCCTAATAGCTGGTGATATTTTCAAATTCAACATTAAAGTTTTGTATCACTCAATCAACACAGTTCGTATAGAGCGACCATGCTTATTATACTCCTCTTCTTCTAAATTCATACCCTGCCATAAGTTCTTTCTAGAGGGTCAATATTTCTTTAGGACATTGTTGTTGCACGTACTCTTCTATATGGACGATCCTGAGGAAATATTTGGCAGGGCCATATCTACTGTTGGAGAACAGTTCCAAGTTAATCCTTTTCCTTCTTCAGAATCTCAACCCCTAGAGATTCCTTTAGAGTTGATCATTAAGCTCTTTGATAATCATCAGTATTTAAGGATGATTGGGGCATCTAGTGAATTCATCAAAATGTCATTGAGGAGATCTAAGGTTGTGCCACGGAGTGAGTATTGTCCTATTTGTTTGGAAGATTTGAATATCAATGCTCGGTGTTACTCAATGGCATGCAATCATGTGTTTCATCAACAATGTATTATGATTTGGCTGCAAATCAGTCGTGAGTGTCCCTTGTGTCGCTACCTTTTGCCAAATCCTTTGAAAGAAGTCAAAATATTATAA 627 0.3796 MERQRYSCSVSRLNDQHTTLIAGDIFKFNIKVLYHSINTVRIERPCLLYSSSSKFIPCHKFFLEGQYFFRTLLLHVLFYMDDPEEIFGRAISTVGEQFQVNPFPSSESQPLEIPLELIIKLFDNHQYLRMIGASSEFIKMSLRRSKVVPRSEYCPICLEDLNINARCYSMACNHVFHQQCIMIWLQISRECPLCRYLLPNPLKEVKIL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00436 208 SUPERFAMILY RING/U-box 147 201 - -
Gma20g00436 208 Pfam Ring finger domain 153 195 IPR001841 -
Gma20g00436 208 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Gma20g00436 208 SMART ring_2 154 194 IPR001841 -
Gma20g00436 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Gma20g00436 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 199 - -
Gma20g00436 208 PANTHER OS07G0631200 PROTEIN 121 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00436 Gma-Chr20 8324899 8325525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00436 134 199 C3H Transcription Factor Family AT1G18760 33.333 1.09e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00436 - K22378 gmx:102660303 162.54