Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00435 ATGGAACGGCAACACTACTCCTATCGTGTGTCAAGGTTGAATGATCAACACACCACGCTAATGCCGGGTGATATTTTCAAATTTGATATTGGAGTTTTATATGACACCTTGCTATACCCATTTCCTTCTCAGTCCATATCCAGCTACAACTTCTTTCATGAGGGTCAAGATATCTTACGGACAGTGTTGGGCGCGCACTTCTCCGTTGAATGTCTTGACGAAATAACAGAGAAGATCGTATGCACTGTTCGAGAATTGTTTCAAGTTGATACCGTTCCTCCTCCTCATCCTTCGGAATTTCAATGCCGAGAGATCCCTTTGTTTGTGAAAATTTTCATATTAAACAATGGTGTGCGTGCAGCTGCAGTGGAGGAAGAGTCCACGCAGTGTTCTAGGATGATTTCGGCATCCAATGAAGCCATCCAGAGTTCGTTGAAGAAATGTATGGTTACGACACAGAGTGAATCTTGTTGTCCTATCTGTTTGGAAGAGTTGAATATCAATGCTGAGAGCTACACAATGCCATGCCATCATCTGTTTCATTTGAAATGTATTGTTTCATGGCTGCAAACTAGTCATGTATGCCCCTTGTGTCGTTACCCTTTGCCAACCCTAAAAAAAAAACTAACATGA 633 0.4202 MERQHYSYRVSRLNDQHTTLMPGDIFKFDIGVLYDTLLYPFPSQSISSYNFFHEGQDILRTVLGAHFSVECLDEITEKIVCTVRELFQVDTVPPPHPSEFQCREIPLFVKIFILNNGVRAAAVEEESTQCSRMISASNEAIQSSLKKCMVTTQSESCCPICLEELNINAESYTMPCHHLFHLKCIVSWLQTSHVCPLCRYPLPTLKKKLT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00435 210 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Gma20g00435 210 Pfam Ring finger domain 158 199 IPR001841 -
Gma20g00435 210 PANTHER OS07G0631200 PROTEIN 98 201 - -
Gma20g00435 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 209 IPR013083 -
Gma20g00435 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 201 - -
Gma20g00435 210 SMART ring_2 158 198 IPR001841 -
Gma20g00435 210 SUPERFAMILY RING/U-box 152 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00435 Gma-Chr20 8322751 8323383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00435 117 203 C3H Transcription Factor Family AT1G18760 39.326 2.92e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00435 - - ccaj:109804929 209.92