Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00410 ATGGCTTTCACACTAGACAGGTTTGAGGAGAACATGGTGTTCACTTTAGAGTCTCAGAAGTCAGTGCCAGCACCCTTTCTGACAAAGACATACCAACTTGTTGATGACCCTCACACTGACCACATTGTGTCATGGGGTGAAGATGAAACCACATTTGTTGTCTGGAGGCCCCCTGAGTTTGCAAGAGATCTTCTTCCCAACTATTTTAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGACAGATGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATTCACAGGAGAAAAGCACCACAGCAGCATCACCAACTCTTTCATGACCAATCACCATCCCAAATTTTTCAGCAAGATGAAAATCTCTGCTGGCTTGACACTCCTCTACCATCTCCAAAACCAAACACAGATATTCTAACAGCACTTTCTGAAGACAACCAAAGACTAAGGAGAAAGAACTTCATGCTCTTATCAGAACTCAGCCACATGAAGAGTTTGTACAATGACATCATATACTTCATCCAAAACCATGTAAAACCACCACCCTTTGAGCAAAGAAGCAGCAGTGTTATTCCAAACCTGGTGGAGTTGGACTCATTGCATGAGTCTCCAAATGACATGGGAGTTCGCAGAAGTGCCAAAAGTTGTGTTGTGGATAAGTCTTTGATTACTTCTACTGAGGAATCAAACAGTTCTGTGAAGCTATTTGGGTTCCCTCTAAGTGGCCGAAAGAGATTGCACCCTGATAACACAAATTGTTGA 816 0.4228 MAFTLDRFEENMVFTLESQKSVPAPFLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQIFQQDENLCWLDTPLPSPKPNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRSSSVIPNLVELDSLHESPNDMGVRRSAKSCVVDKSLITSTEESNSSVKLFGFPLSGRKRLHPDNTNC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00410 271 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 Gene3D - 18 116 IPR036388 -
Gma20g00410 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 266 - -
Gma20g00410 271 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 266 IPR027725 -
Gma20g00410 271 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g00410 271 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00410 Gma-Chr20 7724851 7726451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00410 10 265 HSF AT1G46264 49.837 2.47e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma20g00410 HSF_DNA-bind 9.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00410 K09419 - gmx:100806150 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00410 20 7724851 7726451 Gma14g00317 14 2767058 2768398 PCT
Gma20g00410 20 7724851 7726451 Gma02g02609 02 52050686 52052058 PCT
Gma14g00317 14 2767058 2768398 Gma20g00410 20 7724851 7726451 PCT
Gma02g02609 02 52050686 52052058 Gma20g00410 20 7724851 7726451 PCT