Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00409 ATGTACGAGCTATTAGGAGTGTCCGAGACCAACTCCTTTGACAAGATTAAAGCGACGTTTCGCAAATTGGCCAAAGAGACTCACCAGGACCTAGTTGAGCCAATGAATGATTCCACTGCGTCTCGACAATTTGTACAAATTCTGGCAACCTATGAGGTCATTGACCTGATTAGAGACAAGAACCTTCAGATGCTATCAAACCCTTGCTTAGAAGGAGAGCTTACAAATGATGATGGGACTGAATTAGTGTGTCTACCCTCATGA 264 0.4356 MYELLGVSETNSFDKIKATFRKLAKETHQDLVEPMNDSTASRQFVQILATYEVIDLIRDKNLQMLSNPCLEGELTNDDGTELVCLPS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00409 87 Gene3D DnaJ domain 1 70 IPR036869 -
Gma20g00409 87 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 54 - -
Gma20g00409 87 Pfam DnaJ domain 1 54 IPR001623 -
Gma20g00409 87 CDD DnaJ 2 53 IPR001623 -
Gma20g00409 87 ProSiteProfiles dnaJ domain profile. 1 59 IPR001623 -
Gma20g00409 87 SUPERFAMILY Chaperone J-domain 2 54 IPR036869 -
Gma20g00409 87 PRINTS DnaJ domain signature 2 20 IPR001623 -
Gma20g00409 87 PRINTS DnaJ domain signature 20 35 IPR001623 -
Gma20g00409 87 PRINTS DnaJ domain signature 39 59 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00409 Gma-Chr20 7713246 7714100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00409 2 54 C2H2 Transcription Factor Family AT1G74250 33.929 2.74e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00409 - - gmx:106797599 175.252