Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00401 ATGGGCAACTGTTGCTCTCAAGGCAACGTTGCCGACGGCCCGGCTGACGACTCTGCCGCCGCCAATGACAAGGGAGAAGCTAACCAACAAGGTAGTAATAACCATGCAAACGACAACAATGATAATTCCACAAACCCTACCACTGCCCCAACGACGACATCAAAGCCACCACCCACGGTCACCCCACCCACTTCAAAACCCTCGAAACCGGCTGCAATGGGCCCGGTCCTCGGCCGGCCGATGGAGGACGTGAGAGCCACGTACACAATAGGTAAAGAGCTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGCACAAACAAAGCCACGGGGCAACAATTTGCATGCAAAACAATTGCAAAGAGGAAGCTTGTGAACAAGGAGGACATAGAGGACGTGAGAAGAGAGGTTCAAATCATGCACCATCTCTCGGGTCAACCTAACATTGTGGAACTTAAGGGTGCATATGAGGACAAACAATCGGTGCATTTGGTCATGGAACTTTGTGCGGGTGGTGAGCTTTTTGATCGTATAATTGCTAAGGGACATTACACTGAACGTGCCGCGGCTTCGTTGTTAAGAACCATAATGCAAATTATTCACACTTTCCACTCCATGGGTGTCATTCATAGAGATCTTAAGCCCGAAAATTTCCTCATGTTGAATAAGGATGAAAATTCACCCGTCAAGGCTACGGATTTTGGTCTATCAGTTTTTTTCAAAGAAGGAGAGACGTTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAAGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTAAGTGGTGTCCCTCCGTTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCATTGTCCAGTGCAGCAAAGGATCTTGTAAGGAAAATGTTGACCACAGACCCCAAACAAAGACTGACAGCACAAGAAGTTTTAAATCATCCTTGGATCAAGGAGGACGGCGAAGCACCAGATAAGCCTCTTGACAATGCTGTACTGAATAGGCTCAAACAATTTAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGGATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACAAAGCTAACAGAGCAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACCGCAACAATGCACATGAACAGAATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTTATTACCACTGAAGAACTAGAACAAGCCCTCCGTGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGACGCATTAACTACGATGAGTTTGCGGCAATGATGAGAAAAGGAAACCCAGAAGTTATGACGAAGAAGAGGCGTGATTCATTGCCATTGCCATTGCCATAA 1641 0.4509 MGNCCSQGNVADGPADDSAAANDKGEANQQGSNNHANDNNDNSTNPTTAPTTTSKPPPTVTPPTSKPSKPAAMGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTNKATGQQFACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIMQIIHTFHSMGVIHRDLKPENFLMLNKDENSPVKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGHVDFTSDPWPSLSSAAKDLVRKMLTTDPKQRLTAQEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMRKGNPEVMTKKRRDSLPLPLP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00401 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 534 - -
Gma20g00401 546 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Gma20g00401 546 Pfam EF-hand domain pair 463 526 IPR002048 GO:0005509
Gma20g00401 546 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Gma20g00401 546 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Gma20g00401 546 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Gma20g00401 546 Gene3D - 354 529 - -
Gma20g00401 546 SUPERFAMILY EF-hand 386 526 IPR011992 -
Gma20g00401 546 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
Gma20g00401 546 MobiDBLite consensus disorder prediction 1 80 - -
Gma20g00401 546 SUPERFAMILY Protein kinase-like (PK-like) 75 374 IPR011009 -
Gma20g00401 546 CDD STKc_CAMK 88 345 - -
Gma20g00401 546 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Gma20g00401 546 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00401 546 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Gma20g00401 546 MobiDBLite consensus disorder prediction 23 50 - -
Gma20g00401 546 SMART efh_1 429 457 IPR002048 GO:0005509
Gma20g00401 546 SMART efh_1 465 493 IPR002048 GO:0005509
Gma20g00401 546 SMART efh_1 500 528 IPR002048 GO:0005509
Gma20g00401 546 SMART efh_1 393 421 IPR002048 GO:0005509
Gma20g00401 546 MobiDBLite consensus disorder prediction 51 69 - -
Gma20g00401 546 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Gma20g00401 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gma20g00401 546 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Gma20g00401 546 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Gma20g00401 546 ProSiteProfiles EF-hand calcium-binding domain profile. 500 531 IPR002048 GO:0005509
Gma20g00401 546 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00401 546 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Gma20g00401 546 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00401 546 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 32 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00401 Gma-Chr20 7516712 7521838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00401 1 539 EF-hand Containing Proteins AT5G12180 79.630 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma20g00401 Pkinase 1.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00401 K13412 - gmx:100781355 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00401 20 7516712 7521838 Gma14g00312 14 2738664 2742493 PCT
Gma20g00401 20 7516712 7521838 Gma02g02614 02 52075583 52082297 PCT
Gma14g00312 14 2738664 2742493 Gma20g00401 20 7516712 7521838 PCT
Gma02g02614 02 52075583 52082297 Gma20g00401 20 7516712 7521838 PCT