Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00365 ATGACACCGCCAACGATGCATTATGGTGTTCTAGCTTTGCAAGGATACTCCAACCCATGTGATCAACATGAGCTTAAAAGAGATTCTAAACCGTTACACCACCCCCAAGACTCGACATCCTCCCGGGACAACCACACTAGCTCCTCCTCCCAACGCTCTTGTTGTCCACCATCACCTACTACAAACCAACCCCTAGAGAATCTACCTCTTACAAACTCACCCACCAAGAAGCCACGTGGCAGGTTCGCGGGCTCCAAGAACAAGCCCAAGACCACCCCCTTCCTGGTGGCCCAACCCATGGAACCCAGCATGAAGGTCATCATTGTCAATGTGACCTCGAGTAGCGATATCATTGAGTCCATTCTTGATGTTGTTCATCGAGGCCATGTTAGCCTCACTGTCCTCAGTTCCTCTGGAACGATCATGGAAGTAACCCTCCATAACTCTTCGCATGGTGCTGGTGCCCTCCCACTTTGCGGGCCCTTCACCTTGCTCTCCCTGAACGGCTCCTACTTATACAACAACCACTACACCCTTCATCCTGGAGCCACCCTTGTCCCTCCCTTATCCTTTGGGATTAGCTTTTCCACCTCTCAAGGGCAAGTCTTTGGCGGTGCCATTGGCGGTAGAGTCATTGCCGGTAATGATGTCAGCCTTTCAATTTGCACCTTCAAGAACCCTGTGATGTACAAGTATGCCTCTAGAGACAAAGAAAAGAATGAGGGTAACAATAATAACAACAACAATTATAACAATAACTCTAAAGATTTTATTGGAAGTAGTGAGTTGTTGGGGTTCAACATGATTAGTTGTGGAGTCCGTGGGTGGTGA 831 0.4862 MTPPTMHYGVLALQGYSNPCDQHELKRDSKPLHHPQDSTSSRDNHTSSSSQRSCCPPSPTTNQPLENLPLTNSPTKKPRGRFAGSKNKPKTTPFLVAQPMEPSMKVIIVNVTSSSDIIESILDVVHRGHVSLTVLSSSGTIMEVTLHNSSHGAGALPLCGPFTLLSLNGSYLYNNHYTLHPGATLVPPLSFGISFSTSQGQVFGGAIGGRVIAGNDVSLSICTFKNPVMYKYASRDKEKNEGNNNNNNNYNNNSKDFIGSSELLGFNMISCGVRGW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00365 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 250 IPR014476 GO:0003680
Gma20g00365 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 225 IPR005175 -
Gma20g00365 276 MobiDBLite consensus disorder prediction 21 40 - -
Gma20g00365 276 MobiDBLite consensus disorder prediction 20 96 - -
Gma20g00365 276 CDD DUF296 105 214 IPR005175 -
Gma20g00365 276 Gene3D - 103 247 - -
Gma20g00365 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 40 250 - -
Gma20g00365 276 ProSiteProfiles PPC domain profile profile. 101 247 IPR005175 -
Gma20g00365 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 233 - -
Gma20g00365 276 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00365 Gma-Chr20 6224558 6227325 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00365 75 275 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.925 5.57e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00365 - - gmx:102663326 332.028